BtaINT0135287 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020351 | SLC34A1
Description
Bos taurus solute carrier family 34 (sodium phosphate), member 1 (SLC34A1), mRNA. [Source:RefSeq mRNA;Acc:NM_001103223]
Coordinates
chr7:40249195-40249688:+
Coord C1 exon
chr7:40249195-40249264
Coord A exon
chr7:40249265-40249520
Coord C2 exon
chr7:40249521-40249688
Length
256 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
ACCACTCCCCAACCCCACAGGCA
3' ss Score
9.01
Exon sequences
Seq C1 exon
GTTCCCACTCCTATGCCCAGGGCAGAGGCCAACACCAGCCGGATGCTCAGGAATGCCACCCTGGAGAAAT
Seq A exon
GTGAGTGCCCACAGTATGGGAGATGTCCAGCCCAGCAGGGAAGAGCCTGGCAGAGGCAGGGCTATCTTCCACCTGGCCACTGCTGCTTCCAGCCCAGGAGGACATCTATTGGCCAGCCTAGCTCCTGGGCTGGGGTCAGGCTCTCATGTAGAGGTTAAAGGAACACGAGGCTCTGAGTCCAAGAGGGTGGCAAAGGTTGGGGGCTGGGAGCCGGATTGAGGGGGCAGCAACTTGATACCACTCCCCAACCCCACAG
Seq C2 exon
GCAACCACATCTTTGTGGACACGGGGCTGCCTGACCTAGCTGTGGGGCTCATCCTGCTGGCTGGCTCCCTGGCACTCCTGTGCACCTGTCTCATCCTCCTTGTCAAGATGCTCAACTCTCTGCTCAAGGGCCAGGTGGCCAAGGTCATTCAGAAGGTTATCAACACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020351:ENSBTAT00000027121:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.583 A=NA C2=0.088
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0269010=Na_Pi_cotrans=PU(19.1=47.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCCACTCCTATGCCCAGG
R:
AGTGTTGATAACCTTCTGAATGACCT
Band lengths:
236-492
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]