MmuINT0146268 @ mm10
Intron Retention
Gene
ENSMUSG00000021490 | Slc34a1
Description
solute carrier family 34 (sodium phosphate), member 1 [Source:MGI Symbol;Acc:MGI:1345284]
Coordinates
chr13:55408692-55409160:+
Coord C1 exon
chr13:55408692-55408755
Coord A exon
chr13:55408756-55408992
Coord C2 exon
chr13:55408993-55409160
Length
237 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGT
5' ss Score
8.62
3' ss Seq
TCCTGATACTGCCCTTTCAGGCA
3' ss Score
6.78
Exon sequences
Seq C1 exon
GCTTCCACTTCTATGTCCAGGGTAGAGGCCATCGGCAGCCTTGCAAACACCACCATGGAGAAAT
Seq A exon
GTAAGTACCTCTAACATGGGAGGCGTCCCACGTGATAGCCCTGCACCGCCGTGCCCTGGCTGGCCGCTGCTCATGTTCTGTCCAGCCCCGGGAAAAGCAGCTAACATCTGGGCTTACGGAGTCCCTGGTGCAGAGGCTGAAGGACCTAGATGTGGGGGTCTTAGGCTCACAGCTCGTTGGTTGGTAAAGGCGGGAAGCCGGATGTAGGGATAAAGACTCCTGATACTGCCCTTTCAG
Seq C2 exon
GCAACCATATCTTCGTGGATACGGGGCTGCCCGACCTGGCCGTGGGGCTCATTCTGCTGGCGGGCTCCCTGGTGGTTCTCTGCACTTGTCTTATCCTCCTTGTGAAGATGCTCAACTCCCTGCTCAAGGGCCAAGTGGCCAATGTCATCCAGAAGGTCATCAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021490:ENSMUST00000057167:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0269010=Na_Pi_cotrans=PU(19.3=47.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCCACTTCTATGTCCAGGG
R:
GTGTTGATGACCTTCTGGATGACA
Band lengths:
230-467
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types