DreINT0150645 @ danRer10
Intron Retention
Gene
ENSDARG00000028824 | slc34a1a
Description
solute carrier family 34 (type II sodium/phosphate cotransporter), member 1a [Source:ZFIN;Acc:ZDB-GENE-101006-3]
Coordinates
chr14:824736-826904:-
Coord C1 exon
chr14:826787-826904
Coord A exon
chr14:824904-826786
Coord C2 exon
chr14:824736-824903
Length
1883 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
TAGTGTGGTTTTCCGCTCAGGTC
3' ss Score
6.07
Exon sequences
Seq C1 exon
TCCTCGGTGAATGTGACGCATGCGGCCGTACGAAACTGCACTGGACTGCACTGTGGGAGGGATGGAGACCTGACCTGGATCACTCAGAATATCACCACACACATCAACACGGAGAAAT
Seq A exon
GTGAGTGTCGTTTATTCAGAGGTCAGATGTGTTTTTCTTATTTCTCCTCATATGATTAAACTGATTTATTTGTTTATCTGTGTTGGACAAATCCACTAGAGGGCGCTGGCTATGTTTTTGCGAATCTAAAATGCATTACTTATGTAATGTTGTATGTTTTAGATGACAAATCCACTAGAAGGCGCCGTTAAATTTTTTGGCGAATCTGAAATGCTATTTAGGGTATGTTTTGTTGTACATTTTAGATTGTATCCACTAGAGGGCGCTGTTTCTGTGAATTTTAAATATGCTACTCACAGTATGCTTTGTTGTACATTTTAGATTACATCCACTTGAGAGCGCCGTTTTTTTGTGCGTCTACTAGACGGTGCTGTTTTGTCTTTGTGAATTTCAAATATGTTACAGACCGTTTATTGTACATTTCAGATGTCAAATCCACTAGAGGACGCTGTCTACATTTTTGTGAATATGAAATGTGTCACTTAGGGAACTTTTTTGTTGTATTTTTCTGATGTTAAATTCACTAGAGGGCGCTGGCTTTATTTCCGCGAATCTAAAATACATCACTTAGGGTATGATTTATTGTGCATTTTAGATGATGAATCCACTAGAGGGCGCTGCATTTTTTGCAAATCTGAAATGGTACTTAGAGTACATTTTGTTGTACGTTTCAAATGACAAATCCACTAGAGGGTGCTGTCTGAAATATGTCATCTAGGGTACATTTATTCTGTACATTCCAGATTTTACATCTACTTACTAGAAGGCGCTGTCTAGATTTTTTCAATTTTGAAATACCTCACTTATAGTACTTTTTGTTTTACGTTTCAGATGTCAAATGCAGTAGAGGGCGCTGTATTTTTTGTAAATCTGAAATGTTACCTAGGACACGTTTTGCCATACGTTTTAGATTACATCTACTAGAGGACGCTGTTTTTTTTTTCTTTATGAATTTCAAATACTTTACATTACGGTTTGTTGTACATTTTAGATGTCAAATCCACTAGAGGGCGCTGTCTACATTTTTGTGAATCTGTAATGCGTCACTTAGGGTACGTTTTTGTTGTACGTTTTAGATGTTAAATTCACTAGAGGGTGCTGCCTACATTTTTGCGAACCTGAAATGTTACTTGGGGTACGTTTTTTTTGTACATTTCAGATATCTAATCCACTAGAGGGCGCTGTCTACATTTTTGCGAATCTGAAATGCGTCACTCTGTACTTTTTTGCTGTACGTTTCAGATGTTATATTCACTAAAGGGCGCTGTCTACATTATTGCAAATCTTAAATACATTACTCTGGGTACATTTTGTTGTACTTTTCAGATGCCAAATCCACTAGAGGGCACTGTCTACCATTTTGCGAACCTGAAATGGTACTTAGGGTACATTTTGTTGTACGTTTCAGATGACAAATCCACTAGAGACGCTGTCTACATTTTTGTGAACCTGAAATGTGTCATTGTTTTCATATTTAAAGATATTTGTGTACTACTTTGCTTCCCTGTGTGTGTAAAAAGCAATGTGTCTGCGTGTTTTGGACCCACAAGTAATAAAGACTCTGCAGCTTTTTGTTGGTCAATTGCACCGTCTGTTTCAGTCGCCTCAAAATAGCAATAGGCCAACAATGCACCTTAACACACCTCCTTTTCAGACCAGCACACCTTTAAGTCCACAAAGTGGCACAAATGCATTTGCTATCTAAACAACGTGAGATGCTTAAACGACCCTTGCACCGCTCTGAAAATAACAGAAAAAAAAACACCTGTGCTGCACCTGGTGGTGTATTGCTCCAGGTGTATGATAGAACTCATAGGCTGAAGCAGGTATTTCTAATCCGCCTGTGTTGCTGTATATTATATATAGTGTGGTTTTCCGCTCAG
Seq C2 exon
GTCGTCATGTGTTCGTGGATACAGGGCTGTCAGATCTGGCTGTGGGACTCATTCTGCTGGCCGGATCTCTGATGCTGCTGTGCTCCTGCCTGCTGTTCATCGTTAAAGTGCTCAACTCACTTCTCAAAGGTCAAGTGGCCAAGGTCATCGAAGGGGTCATCAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028824:ENSDART00000148687:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0269010=Na_Pi_cotrans=PU(19.6=47.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCGGTGAATGTGACGCAT
R:
CTGTGTTGATGACCCCTTCGA
Band lengths:
286-2169
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]