HsaINT0152518 @ hg19
Intron Retention
Gene
ENSG00000157765 | SLC34A2
Description
solute carrier family 34 (sodium phosphate), member 2 [Source:HGNC Symbol;Acc:11020]
Coordinates
chr4:25673223-25674876:+
Coord C1 exon
chr4:25673223-25673343
Coord A exon
chr4:25673344-25674708
Coord C2 exon
chr4:25674709-25674876
Length
1365 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
GATTCTTTGTGGTCTTTCAGGCC
3' ss Score
9.57
Exon sequences
Seq C1 exon
ACCCAGATTAACGTCACTGTTCCCTCGACTGCTAACTGCACCTCCCCTTCCCTCTGTTGGACGGATGGCATCCAAAACTGGACCATGAAGAATGTGACCTACAAGGAGAACATCGCCAAAT
Seq A exon
GTGAGTGGAGCTCAGTGGATTGGCCACTATGACAGGTGTTGTCTGGGGGTGACCTATTTATCCGTGTGAAGTCCCAGTAAGTGAAGGAAAGGACAGTAGGAGTCACCAAGCACCTGCCCTACATCAAGCAGTGAGCAACATGCTTTCACAGCAGAGGAAACTATGGCTTAGGAACTGAGGTGACAGGCCTGAGGTCCCACAGCAAGGGCAGAACTGGAACTTGAAGTCCATTTCCTTTGCCAGCTCCACACCACCTCAGAAAAGCTCAACAGATTCTAGAGGATTCCCTCTACATGCTTTGTTCAGATTCCTTTAGTCAATAACTCTAGGGGCCAGGCATGGTGTCTCAAGGCTATAATCCCAGCACTTTGGGGAGGCCGAGATGGGCTGGTCACTTGAAGCCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCTGTTTCTACTAAAAATAATACAAAAAAAGTAGGCATGGTGGCTCAAGCCTATAATTCCAGCCAAGATTGCACCACTACACTCCAGCCTGGGCAACAGGGAGATAGTCTGTCTCAAAATAAAATAACTTTAGGGAGACGACAACCCGATTTGAAGGAAGATGTGGGACCCACATAGAACAGATGTATTCACTCAATTAGTCCCTACTGTACAGCAGGCCCCATTTCAGGGCACTGGGGCTGTAGCTCTTGAACGGGCAGTGAGCTTGCATGATGCTCTGATTATTAAGAAGCTGTAATGTTTTTTCCAACCCAGCCATCCTTCGTTATTCTAATTACTCCTTACATATACTTTTGTATATCTCTGCTTCTCTCTTCTCACCCTCCCACCACATTAATTCTGAGCACTATATCTTAATACTCTAGGTATGATTACCCCAAAGAATCAAGTTAACTTACCACCTCCCACATTCTAGGCACTATACATTCATTCATATAACCATGTTTTGCTGGGATTATCTGGGGGATGCAGAAGGGGCTTTATAATTAGCAATGCCCCTTACTTTGACTTGCCCATCGAATCCCTCAAAGCATACTTATCATTAGTAAAAAAAAAAAATTAGACCATCGACAGCATGGTCTTTAGAGACAGAACTGGGCTGAGTCTACCCCTGAACAGTTGTGTGATTTTTAAAGCCATCACTTCATCTTCCAGCCTCATGCGATCCCACTGATTATGACATAGTTTCAGTGGTGCCCCTTGCTGCGAAGGAGGCTGAGAAGGGCTGTCTTGATTTGGGGCTGCCATCTGTTAAACTAACAACCAGGAATCTGTTTGTAGGAAAGACAGGATCTGGGGGAATAAATAACAATCTGTAGCCGTGGTGGCTCCATGCCCTCCTGACAAGATTCTTTGTGGTCTTTCAG
Seq C2 exon
GCCAGCATATCTTTGTGAATTTCCACCTCCCGGATCTTGCTGTGGGCACCATCTTGCTCATACTCTCCCTGCTGGTCCTCTGTGGTTGCCTGATCATGATTGTCAAGATCCTGGGCTCTGTGCTCAAGGGGCAGGTCGCCACTGTCATCAAGAAGACCATCAACACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157765-SLC34A2:NM_001177998:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0269010=Na_Pi_cotrans=PU(19.3=47.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGATTAACGTCACTGTTCCC
R:
AGTGTTGATGGTCTTCTTGATGACA
Band lengths:
287-1652
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)