MmuINT0146280 @ mm9
Intron Retention
Gene
ENSMUSG00000029188 | Slc34a2
Description
solute carrier family 34 (sodium phosphate), member 2 [Source:MGI Symbol;Acc:MGI:1342284]
Coordinates
chr5:53456736-53458973:+
Coord C1 exon
chr5:53456736-53456856
Coord A exon
chr5:53456857-53458805
Coord C2 exon
chr5:53458806-53458973
Length
1949 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
CTGTTTGTGTGTCTCTTCAGGTC
3' ss Score
13.27
Exon sequences
Seq C1 exon
ACTGAGATGAATGTCACCGTCCCCTCGACTGATAACTGCACCTCTCCTTCATATTGCTGGACTGATGGCATACAGACCTGGACCATCCAGAACGTTACCCAAAAGGAGAACATTGCTAAAT
Seq A exon
GTGAGTGGGAATTAACTGGCTGGCTAGCTGGGTGGGTAGTCTAGGAATCTGACCAGTGTGCAGCCCAGTGATTACAGGAACAAAGGGAAGACAATGCTGGGCCTTCTGGTGACTCCATGCCACCTGAAGAGCTTTTGATAGGGATTCTACAGTGCTCCCTTGGTGTGCCTTTGGATCCCTTAGTCAATAAGTCAGGGGTAATTGATGGCTGGTTTGATTATATGGTCTGTCCACTTAATGCATCTCTTCTGATCAAGGCACTGAGCCCACCTGATACTCCCATATTTTAGGAAACCTTTCATCCTTTCAAGCCTTCCTGAATCCCACTTTCTCCTCTATCATACTACCACGTTTTGGTGTGATTATCCCTGCAGAATCAGGCAAACTTGTCATCACTGATGCCCTAATTGCTATCTGTCAGTAGAACTATGATTTTCAGGATTTGTCACAAGGGATACATAAGAAGGACTTTGGTAACAATCACCAGGGCCTGCCCAGGACAAGCTGAGTGATTTAAGGAACACTCCACTTTCCAGTCTCAAGAGTCCGGTCTGGTGGTGCCTGCTTTTAAGTCATAGGAGGTAGAGATAGGAGAGAAGATCAAGCTAGTTAGTCATCCTGTTGGAGATCTGGGCTATAAGCAGATCTTTTCTCAAAAAAATAGATGCTGGAGATGCATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGATCTTATCATACAGATCTTTCACTTCCTTAGTTAGAGTCACGCCGAGATATTTTATATTATTTGTGACTATTGAGAAGGGTGTTGTTTCCCTAATTTCTTTCTCAGCCTGTTTACTCTTTGTGCAGAGAAAGGCCATTGACTTGTTTGAGTTAATTTTATATCCAGCTACTTCACCAAAGCTGTTTATCAGGTTTAGGAGTTCTCTGGTGGAATTTTTAGGGTCACTTATATATACTATCATATCATCTGCAAAAAGTGATATTTTGACTTCTTTCTTTCCAATTTGTATCCCCTTGATCGTTTTTTGTTGTCCAATTGCTCTGGCTAATACTTCAAGTACTATGTTGAAGAGGTAGGGAGAGAGTGGGCAGCCTTGTCTAGTCCCTGATTTTAGTGGGATTGCTTCGAGTTTCTCTCCATTTACTTTGATGTTGGCTACTGGTTTGCTGTAGATTGCTTTTATCATGTTTAGGTATGGGCCTTGAATTCCTGATCTTTCCAAGACTTTTTTTCATGAATGGGTGTTGGATTTTGTCGAATGCCTTCTCCGCGTCTAAGGAGATGATCATGTAGTTTTTGTCTTTGAGTTTGTTTATATAATGGGTTATGTTGATGGATTTCCGTATATTAAACCATCCCTGCATCCCTGGAATAAAGCCTACTTGGTCAGGATGGAGGCCCATTGGACATGCAAACTTTATATGCCCCAGTACAGGGGAATGCCAGGGCCAAAAAGTGGGAGTGGGTGGGTGGGGGAGTAGGGAGGAGGGTATGGAGGACTTTTGGGATAGCATTGGAAATGTAAATGAGGAAAATACCTAATAAAAATATTTTTTAAAAAAGATGCTCAGTAGTAAACTCACATGCTCATGCAAAGAACTGCAGTTCCTACATCAGGTGGCTTACACGTAATGTACGTCTAGGGAATTCTGACTTCTGGTATACCCAGGTACCTGGCATAGGCACAGGTGCACGCGCACTCATGCACATACATACACACACACAGGTGCGCACACAGACAAATGTGCACACATACACAATCTTTTAAAGGTTTTCTTTTTAAAGTTAGCAAACAACAGTGTGTCAAGGCAAACTGCAAAGGATACCATTAGCCTGAGTCTCCATGTCTAGCTGCCAGGCAAGATTGTATCCACAAGAAAGGAGGAGTAGATAGCAATCTGGACAGGGTGGGCCCTGACTTCCTGACCAGCCTGTTTGTGTGTCTCTTCAG
Seq C2 exon
GTCAGCACATCTTCGTGAACTTCAGTCTCCCAGACCTTGCTGTGGGCATCATCTTGCTTACTGTCTCCCTGGTGGTCCTCTGTGGCTGTCTGATCATGATAGTCAAGCTGTTGGGTTCTGTGCTCAGGGGACAAGTCGCTACTGTCATCAAGAAGACCCTGAATACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029188-Slc34a2:NM_011402:9
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0269010=Na_Pi_cotrans=PU(19.3=47.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATGAATGTCACCGTCCCC
R:
CAGTATTCAGGGTCTTCTTGATGACA
Band lengths:
286-2235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: