GgaINT0072513 @ galGal3
Intron Retention
Gene
ENSGALG00000014372 | Q6TQF9_CHICK
Description
NA
Coordinates
chr4:75887777-75888766:-
Coord C1 exon
chr4:75888646-75888766
Coord A exon
chr4:75887945-75888645
Coord C2 exon
chr4:75887777-75887944
Length
701 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGT
5' ss Score
8.62
3' ss Seq
TTTCCTTTTCTTTTTTCCAGGCC
3' ss Score
12.64
Exon sequences
Seq C1 exon
ACACTGCAGAATGTCACAATTCCACCTTCAGAGAACTGCACGTCTTCTGAACTTTGCTGGTCAGAAGGAAATGTGACGTGGACCATGAAAAACATATCTGAAACAGAATATATCACTAAAT
Seq A exon
GTAAGTAGTTGACCCTTTTTTGCCTTTGATATAATGTCTTTACAGAGATACATATTGTTCTAATGGTGTTAATAGACCACTTTAAAGGTGTATCAAGAGGCATTCACCTGTATGTGTACACAGGATACTTTTACAGCTGCAGCCAAAACAGCTTGTGCTCTGTTTTACAGCTGGAGTTACCAGCATCATCACTGTAGCTGGCAGTACATGGATCTCTTTCCATGCTCCCTAGTATCAGTAATTGAGGTCTTCAGTATCACTTCACCCTGGCTATTCAGGTGACTTGGTGCTACAGTTACAATTACTTTGCTGTAGCAGTTGCTTGGATATCTCCATCCAGGTGTGCTGTTCAAGAATTTCAACAGCTGTTCTCTGGCACATAGCCATCTCTTGCTGACCCACAACCCAGCTAGGAGCACATTATGATTTCCTCATTTTGTTGTACTCTCCCTCCATGCACGAAGCTGCACGTGGTCAGCCAGACTTCTTGCTCTGCAGATGTGCCTGCTTTATATTTTATGAAAGTGTCATGTAAGAGCTCCTCTCAGAAACAAATTTTGTGCAGCAAAAGGAGACAGCATTTTCAGTTTTTGCCATGTGTGCTCTGGTCCCATTTTCGTGTGCATGAAAACCAGAGCTGGCCTTGGGATCAGAAACAAAAATGAGACGAGGCCGATTTGTTTTCCTTTTCTTTTTTCCAG
Seq C2 exon
GCCGGCATCTCTTTGCAGAAACAGACCTGCCTGATCTTGCCATCGGTCTCATACTTCTGGCTTTGTCCCTGCTTGTTCTTTGCTCCTGTTTGGTGATGATCGTTAAGCTGTTAAACTCTGTGCTTAAAGGACAAGTAGCAAGTGTTATCAAGAAGACAATCAACACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014372:ENSGALT00000023222:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0269010=Na_Pi_cotrans=PU(19.3=47.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGAATGTCACAATTCCACC
R:
CAGTGTTGATTGTCTTCTTGATAACA
Band lengths:
286-987
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]