GgaINT0016682 @ galGal3
Intron Retention
Gene
ENSGALG00000003075 | SLC34A1
Description
NA
Coordinates
chr13:10215486-10215887:+
Coord C1 exon
chr13:10215486-10215555
Coord A exon
chr13:10215556-10215737
Coord C2 exon
chr13:10215738-10215887
Length
182 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
CCAGCCGTGCTGTGGGGCAGGCG
3' ss Score
3.76
Exon sequences
Seq C1 exon
AACTGCACGGCTTCTGGACATTGCAGCAGTAATGGCATTGGGATCCTCCACAACGTCACCAGGCAGAAAT
Seq A exon
GTGAGTGGGTCTGGAGGGGGTGCTTGTAGGGCTGGGGGCGCTGTGGGTCTGGAAGCCCTGGGCATAGGGCTGAAGGAGGGCCGGGTGATGCTGTGGGGCTGTGCGGGGCTGCTTGGTGGGGACAGGTTTGTGAGCGGGGCCGGGCAGGCCCCAGACCCTCGCCCAGCCGTGCTGTGGGGCAG
Seq C2 exon
GCGAGCACCTCTTCACGGACACGCCGCTGCCGGACCTGGCCGTGGGGCTGGTTCTGCTGGCCGGGTCCCTCGTCGTGCTCTGCACCTGCCTCATCCTCCTGGTCAAAATCCTCAACTCCCTGCTCAAGGGGCAGGTGGCCAAAGCCATCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003075:ENSGALT00000004859:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0269010=Na_Pi_cotrans=PU(15.0=41.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCACGGCTTCTGGACATT
R:
CACCTGCCCCTTGAGCAG
Band lengths:
205-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]