GgaINT0016681 @ galGal4
Intron Retention
Gene
ENSGALG00000003075 | SLC34A1
Description
solute carrier family 34 (type II sodium/phosphate cotransporter), member 1 [Source:HGNC Symbol;Acc:HGNC:11019]
Coordinates
chr13:9450477-9450809:+
Coord C1 exon
chr13:9450477-9450572
Coord A exon
chr13:9450573-9450739
Coord C2 exon
chr13:9450740-9450809
Length
167 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
GTGGGGTAGGGGTGCCTCCAAAC
3' ss Score
-21.62
Exon sequences
Seq C1 exon
CTGGACAAGTCGGTGATCACAGGCATTGCGACAGGGGATGAGAGCCTGCGCAACCGCAGCCTCATCCGCATGTGGTGCGGCCCCGCACCTCCCCAG
Seq A exon
GTGAGGGGCTCATGGCCTTGCTATGGTGCTGGGGGGGGCAGTCTGGCCATCCAGATCCCCCCTAAAAGCACCTCATGGAGGGCAGTGGGCTGGTGAAGATGCTGTGGACTCACCCACAGCCTGCCCGCTCCTTGCAGACTGCTGCCGGTGGGGTAGGGGTGCCTCCA
Seq C2 exon
AACTGCACGGCTTCTGGACATTGCAGCAGTAATGGCATTGGGATCCTCCACAACGTCACCAGGCAGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003075:ENSGALT00000004859:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAAGTCGGTGATCACAGGC
R:
TTTCTGCCTGGTGACGTTGTG
Band lengths:
162-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]