MmuINT0146267 @ mm9
Intron Retention
Gene
ENSMUSG00000021490 | Slc34a1
Description
solute carrier family 34 (sodium phosphate), member 1 [Source:MGI Symbol;Acc:MGI:1345284]
Coordinates
chr13:55504605-55510116:+
Coord C1 exon
chr13:55504605-55504700
Coord A exon
chr13:55504701-55510052
Coord C2 exon
chr13:55510053-55510116
Length
5352 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TCACCTTCCTCTGAATTTAGGCT
3' ss Score
8.59
Exon sequences
Seq C1 exon
CTGGACAAGTCTGTGATCACCAGCATTGCCGTGGGGGATGAGTCCCTGAGGAATCACAGTCTCATTCGGATTTGGTGTCACCCAGACACAACAGAG
Seq A exon
GTGAGTTCCAGAGTCAGGTAAGACGACACCCTCTTTAGACACTGGCCTGTTTGTCTCAGAGACTTTGGAAATCACTTGGCTAGGAAAGAGCAGATGTGCAATTGTTCTGCATCAGTACAGCCAGGACAGACATTGGTAATCCCTCCTAGCTGCACACGCTGCTGTAGGCAAGCATCATCTGTGTATTTAGTGTTGCGTGTAATTGATCTGGCCCAGTGGCTTTCAAAAAGCTGTTGTTCCCCAGACTAACAGCATCCATACCACCTGGGAACCTATTAGAGATGTAAACTAGATACAGAGTAGAAGAAAACCCACCGCGTAGTATGTACACATCCTTCCTAGACCAATTGAATCTGGAAAAAAATGTTGGGAATGAGCCCGGTTGCCATGTCTCCGACTTGCCCTCTAACTGCTCTGTGATTGAGTCTGGAAACCATGGATCAAGCTCAACCCTTTGGTTTCACAGACAGAGACGCAGGCCCAGGACTACCCTGCTGCAGGGACACTTGGGGCTAGTCACTGGGCTCTGCCATGCTTGGAGCTTGAGGTGTAAGTAAGGTGGAGAGGACCAGGAAGAGAGTCCAGAAGGATATCGAGAAGTTTGGACCCTAGGATTCCAGCTAAGGAGCAAGACTAGGTGTGATGCTCACTAACTCTCAGGGGTGGCTCCCCTGAGAGACATAGCAGTCCCTGGTGCTGGCAGGGGCACTTTCATTGGGAGCCACAAGTTCATTGTTTCTGCTCAGAATGAGGAACTGCTGGGATTGGTTGGGCACTCATGGATCAGCCGTTATGCCTGTGGTAGTAGGCATAATAGCAAGGCGATTAGGCACAAGGAAGTAGGCAATTAGCACACTTTCTTACTCAGCCATAAAAGGGAAAAACTGCTTCACCAAACCACAGCCTTCCCAATTTGCTTCTCCTTAATTATTGCATACAAGAAATAGCTCCATTTAGAAAAGCTACAGGGAAACCCAGAGCGCACGGCAGAGGCACAGGCCCATCCTCCACCTTCTGTCCTCTTGCTGTGGATGTTCCCGGTCCTTTCTACCAGCACTCAGGAAACATGTTCCGTCAGCCGGCCCTGCGGTGTTCCTTGGCATCCCAAGTGGCTCACGGCATCAATGCCACCCTTCTGAGAGTTCTGCTCTTCCGAGAGTTCAAGGCAGCTTGACAACAAAAAGCCTACGTGGACAGCTTTAAGGCTGCCTCTGTGATCTTCCTAACACGTCAGCCACCTTCTCATGAGCTCTCTGGCACTCTCAGGCAAGCTCTGTGAGTCACTGCAGCCTCAGAAAGCACAGTCTGGAGAGAGGAGGAGAAATCACGTACTGATCTAAAAAAGCCTTGGAGATATTTCCGTCCTGATGTCTGTCTTGGGCAAGTCTCTACCTGTGCCCTGAACCTCTTCACCCACTGTAGTCATGAAATGAGACCAGCCAAGTGTGCCAGCCATTTTACACAAACGGAAACTCAGCTGGGCCAGCCTTCAGGCTGTTTGCTGTTCCAGCTGTCACTTGCCAGAGCACTGGTTCAGGTCCCTGAACTAGCAGGAAACCTTTTTCTCTAACAGCAGGTTGCATTTCTTGGCTTGGAGTATAAGGCTGGATCTGAGGACCCTGCTCTCTGCCTCCTCTGGACCTGTCCCCTGCAGGGATGTGACTTACACAGCAGCATCACATGGTCCTGGGATGTGCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACTACCCTCATTTTTCTTTTCAACTCTTCATGGCCTCCAGCCTTCACCACACTGGACCCAACGTTAGCCAAACTGGTCTCAATAGAAAGGGGGAATCAAGTCTTTTGAGCGTCTGAGACTTGTGGGATGATGGGTGACCTGGCATTGTCCTTGGAATCCCTTCTGAGAGTCTCAGTGTGAACTGACAACTGTACCTGCCTGACTTAAGCGGCATCTTTGAAGGACTGGTAACTAGGGGCAGCTGCTATTAATCTCCACTCTGCAGATGGGAAGCAGCCTCTCTCAGAGGGGTACAAGTGACTTCCTGTATTATTGCTTCCTGTAATGGAGGGCAAGTCTCGATCCTAATGGAAAATTCACTCCTCGTGCAGCTGATTCTCCCAGATGCCACTCTAAGGTACCCGAATCTGTGTCCATTTCTCTTCCTGCCTGCAGCACACCCCAGACCACGCCACCCTCTCAAGGCTGGTGGAGTGGAGACGCTCTGAGAAGTTCTCTTTGCAGCCACCAGATGGCGCTATTGGCCTAAAGTGCTCCGCGGCTTCCAGAAGAACAAAGGGCCCCTCAGCTACTATACCCTCAAAGGGGAAGCTATTGTGCAAGCCCACATCCTCTGTGGTTCTCTCCTGAGGAAGGACTCTTGAAGTATGGAAGTCCTTTGTGAACTTAATCACCTCCTTCAGTTCCCAGAAGTGTCTCAATCTAGGATGTCCCTGTAGGCTCTTAAATACCAAGATGCTCTCTCTTCCAAGATGCTTCCAAGTAGCCCCGCGGGGAAAAGAAGACAGCTTCAGGGACTCTGTCATGGAGACAACGGAAGCCAGAGAGGTTACGTGTACCGCCGGCTCCATTTCACACAGCTGAGAATAGCTCAGCCGCAGTGTGAGCGCAGGACTGTGGCACACTCTTTTGTTCTGCTTTCCACTTCCACCCGGCTCCCTTTCTTCGCCACTTCTCTACCACAGACAGGGGGGACACATCTTGGGAACGGGACCAGATCTGGCCTTCCCAGCTCTATGAGCTAGGCCAGAGTTCCTACCTTCTCTGCCCTGTATGCTCTCCTTAAAGGATTCTCTCTCCCTTCCATTCTGCCCTAGCCTGGCATTACAGTGGATCCTCCCTTGTCACTCCCTTGTCTCTCCGTTCCCATCTTCCACTTTAGGGTCTCTGACTCCCTTTCTGGGTTCAGTTAAGGTCACACAATCCCAGGAAGAAAAGTCAAGTTTCCAGAACCCCATAGGAGGGAGGAGAACACAATCATCGTTGAGTGAGGTCTGGAGCACCAAAACTACAAATAAACAACAACACTCCAGATACCTCAGTCCTCAGCCTAGCCTTGCCCCGACTCAGTCAACCCCACAGTGGGACATTCACCTGCCTCCAGCCTCTATAAGACCCACAAAAATCCCCTCCCCAGAAGACCCCAGGAAGCAGCTCAGAGAAAGCCAGTAAGGTGTGCACGTATCTCAAGAAGTCATCTGCTTCCTAGGGCTTTGGGCTGGAGACCTTCAGGAAGGTCTTCCAAGTCCCTTCCCAAAAGGGTCAGGATCTTTTCTTCTGTAACCTTTATATCTTTACTATTCCAATTTATTTTTCCCAAAGATGTATTTGTTTTATGTGCCCTGGTATTTTGCCTGCATGCATGTCTATGTGCCAGATCCCCTAACACTGGAGTTACAGGCACTTGTGAGATGCCACGTGGATGTGGGGATTGAACCTGAGGCTTCTGGAAGAGTGCCCTGTGCTTTTGAGCCCCAATTATCCAGATTTAAACAGGCTCAGAGAGGTGGTGTGGCCTGTCCCAGAAAGTTGATTTTAAAAGGAGATTTGAACTCAGCAAACACTTGGCTCTCCCCATGACTAAACCCCAGCCTGACTCTTCCTGACTAATCCCCCAGTTTCTCCTGAGCAGGTCAGCAGAATCTCTCACCTTATTAACATTGTTGTTTTGTTTTCTTCTTGAGATAAGATCTCACACTAATCCAGGCTGGCTTTAAACTCATGACAATCCTCCTGCCTCAGCTCTCCAAGTACCCATCTGGATTTCTGTCCTAGAAGATGATTTTTATCCTAGTTTCTTGCCTAGAGTTCAGGCCTTTGGACTTGGTGGTGCCCCAAGGCTATAGTGAACTGGGAATAACAGCTGAGCACGATGTCTTGCTCAAGGGAGAGCATCGCACAAACCAGCTGCAGGCTGTTGAGCCTGTCGACATTACACTGGAGGCTTTTTGTATTGTTTTGTTTTACTTTTGTGATATTGGGAATGAAACCAGGATCTTGTCCATATAGACAAGGGTTGGCCCAAGCCCCAACCTGATCATACAGTCTTTAAATGACACATGGCTTGGAAAAGAACCTAAAGAAGCCATAAGCCTCCCAGTGTCAGCTCCCTCCTGAGCCCCACCCTTAGCTTCTCCATGGCCATTGCGTTTCCTCCTGACACAGCTCCATGATTCCTGGGCACCAGTGGGCAAAGTACAGAATCCTGGCTTCATTTTCAACAAGTCCATAATCCAGTGAAACGACAGACTGGTACTCTACCACCCGAAAGGACACTTCTGCTGGCCTGAGAACTCTGCTTCCTGGAACTTTAAAGTGTATCTCCATAGGCCTACTGACATAGGCGTGTGACTGCTAAATACTTGGGGGCTGAGGCAGGAGGATGGCAAGTCCAGCGCCTACCTGGATAATTTAGTGAGACCCCCATCTCAAAATAAAAAATGAAATGAGGTCTTGGGGTGTAGCTCAGTAGTTGGGATGTTCGCTGAATATTTGTGAGCGTCTAAGCTCAATCCAGAGTATTGAAGGAAAAGAGGCATCAGAGTAGATACAACATGCATAGGAATTGAGCCTAAAGCTACATAATTGTGTTTTCTCTTATAGAACCAGGAGCTGGGCCACACTGGGGTGTATCTCTGCATGGTAACAGTGGTCTGGAGCTAAATCGCTGCTGTCTCTACAGACCCGCCATCTTCACAGGCAGCTAAATTCTACCATAATTTAGGTCACCTGCCTGACTTTGGTCCCCTGTATCTAGGGACTCTTCTTCACTTCACTCAGTGGGTCCAGAAGAAAGGATCAGGGCTAGACCCTCTGCCCTCACCCATCTTCCTTCCATTTGGGTTCCACAAAGGGCAAGGCACTGAGTTTGGGCAGAATGAAGCTTGGGCTAAGTGAGCCTTAGAGGGATCATGGGGCAGGAACTGAGGAAGAAGGCGTCATGAGGATAAGAACTGGTAAGAACAGGTAGGGATGGAGGCTTTCAGAAAAGGGGCTGCAGAAGCCACTGAGAGAGAGGGGGACCAAGACAAGACAAGACGCTACTAATGTGGTGATTGGAGGTCCCCACTGATCCCAGGGGTAGGCAGATCAGGCCAGTGACAGGGTAGAATATGTACGAGGTCATATTTCTGAGTGGTATTTCAACTTCATCTCTTCTACTGAGAAGGTAGGCGCAGAGAGGCCAAGCAACAGGTCCATGATCACAGAGCCAGAAATGTGTTCTGGTACTCCCATTTCGCCAGAACCTCTTTTAGCTCCGCCCCCCCACCCCATCCCACCCCGGCTGTGCTTTTTCTAGCTTCTCTAAGTCACCTTCCTCTGAATTTAG
Seq C2 exon
GCTTCCACTTCTATGTCCAGGGTAGAGGCCATCGGCAGCCTTGCAAACACCACCATGGAGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021490-Slc34a1:NM_011392:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: