BtaINT0135286 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020351 | SLC34A1
Description
Bos taurus solute carrier family 34 (sodium phosphate), member 1 (SLC34A1), mRNA. [Source:RefSeq mRNA;Acc:NM_001103223]
Coordinates
chr7:40242804-40249264:+
Coord C1 exon
chr7:40242804-40242899
Coord A exon
chr7:40242900-40249194
Coord C2 exon
chr7:40249195-40249264
Length
6295 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
GACCTCTCCTCTTAATCTAGGTT
3' ss Score
8.79
Exon sequences
Seq C1 exon
CTGGACAAGTCTGTGATTACCAGCCTTGCCTCGGGGGACGAGTCCCTGAGAAATCACAGCCTCATCCGGGTCTGGTGTTACCCAGACCCCACAGAG
Seq A exon
GTGAGTACCGGGTCCAGCCTTGGTGAGAAGACTCCCTCTTCAGACAGCTGACTGCTAGCGTCATGGTCTGTTTAAAATCTCTGCAGAGACCTTGGCCGGAGAAGGCAATGGCAACCCACTCCAGTACTCTTGCCTGGAAAATCTCATGGACGGAGGAGCCTGGTAGGCTGCAGTCCATGGGGTCGTGAAGAGTCGGACACGACTGAGCAACTTCACTTTCACTTTTCGCTTTTATGCATTGGAGAAGGAAATGGCAACCCACTCCAGTGTTTTTGCCTGGAGAATCCCAGGGATGGGGGAGCCTGGTGGGCTGCCGTCTATGGGGTCGCACGCACAGAGTCAGACACGACTGAAGTGACTTAGCAGCAGCAGCACCAGAGACCTTGGCAATCCTTTAGCTTGGGAGGACAAGTAGGGGGCACTTCTGCTATGATACTGCACCTGTGGCGGATATTGGTACACTCTCCCAGGCTCACACCAGCTTCAGGCAGCCATTGCTAATCAATTAGAGTTGGCATGTTATTGAATTAGCCCAAAGATCAGTTCTCAAAGTGTGGGCCAACGGCACACCTGCCACCTGGGAACCCACTAGAGACGCAAAGCATCTGGCCCTTTCCTAGACCCACTAAATTAGAAAAAAGAAATCTGATGGAGCCCAGCTGTCTGCATTTCAACAAGCCCACTAGTTGAAGAACCACTGATCTGGCTCAACCCTGTGGTTTCACAGGTAAAGAAATAGGCTCCAAGAGGCTAAGAAACCCTTTAAAGCTTGTTCTACCGCTTCAGGGCCCCGAGCATAGGTCTTGCATTCTAGGGCTGTCTCTCCCCATCGGGATCTAGGGACTTGCTTAGTGACAGCTCTGCCCAGGTAATGTGGGCAGAGGAAGGCAGGGAGAGAGCGCTACAAGGATGCCTGGGAAAACCAGGACCAACAGGGAACCAGCCCAGAAGCAGGACAAGAAGGCCATGGAGACCTCACGGGAGACACACAGCCACTTGTACTGATACTCGTACTCCTTCTGCTGGAGACTGCTGCAGGCTTGTGTCCCCTTGTCCTGTGTGTTCTCCTGCTGTTTCCTGGCTTCTCACGCCTGGAATGAGGCTCTGTTTGGATCAGTTGGACACTCATTGACCAGCCATCACACCAGGCTAACAAAGAAGCAGGCAATTACCACACTTTCTCATTTAGCCATCAAATAAGGAAAACGCTTCATCAAAACCATAATCCACAGTATCTGCTGCTGCTGCTGCTAAGTTGCTTCAGTCATGTCCGACTCTGTGCGACCCCACAGACAGCAGCCCACCAGGCTCCCCCATCCCTGGGATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTCCTTCTCCAATGCTTGAAAGTGAGAAGTGAAAGTGAAGTCGCTCAGTCGTGTCCGACTCTTCGAGACCCCATGGACTGCAGCCTACCAGGCTCCTCCATCCATGGGATTTTCCAGGCAAGAGTACTTGAGTGGGGTGCCATTGCCTTCTCCAATCCACAGTATCTACTTCCCCTTGATTATGACATACAAGTAACGCCATCAAGAAAGAAAGATGAGGAAACAGCACAGCTTCTTCACTCCCTACTTGATGTTCCTGGACTTTATCCCAGCGTGAACAGAGAACATTCTTTCAACCAGCCCTGCAAGCTTCCTTTGCATCTGAGTGGCACACAGCTCCAGCTCAGTGCTGAGTATTCAAGGCAGTTCGATATCAAAAAACCCATGCAGACAGCTTTTGCAGTGGCTTTATGACCCCACTAACACATCTCTCCTCACAAGCACGCTGGGCACTCTCCAAGCTCTCTGAATCACTAAAATCCCCTCTGCTTCACTGCAAAGTGAGTCACACACTTTGATCAAAAAGCGAGCTGTGGAAGGGAGTTCCTCGGCCCGTGGTGATCCTTGCTTACTGAAATCCCCGCCACCTGCCTGCAGCTGCATTCGGCCAGTCTCCCTTTGCAGGATGCAAACGGGGCCCTCACCTGATGGAACTCTTAGTGATGCTGGTGAGGCGGACATGGTCCACCTGGAACTTGAGGTCCAGTGACCAGAAGCAAACTGCCCAGTTCCCTGTCTTCACATGTTCCTCCATGGCTCCTGCTACCACTCGCCCGTGCACTGGTTTCTCAACCCAGCCCTCCTGGGGAAACCTTTCCTTGACAGCAGGGTCCAGATAGAATTTCCTTGGCCTGGAGAGTGGCAGAGGGTGTGAGGTAAGCTCCCGGTCCTGGCCCTTTCTCTGGGACAGTCCCCTCAGGAAAGTGGTTCACAATCAGGTGCCCTGGCAGCTCCTCCTACACATTTTTCCTTTGGCCACTGGGTCTCCCTGTGGCCCCTTCTGACCTGTTCTCACTGCCTCCAGCTTGCACCAAGCCAGGCCCAACATTGCCTGAGCCAGCCTCCAGGGCACCTATGTGATTGGCAGTCTGGGATTTTCCAGATGGTGAAAGAAAAAGCCAGAGTTGGTATTAGTATTCCAACAACTCTTGATGCTCAGGGGATCCTGACACTGTCCTGGGAATTACCTTCCTGTTTGGTCACCCTGTGGATTGTCAACCCTACATGCATGGATGAAAGAAGCTTCTTCCACAGACTTGCAACCTGGGAGGCAGGGATTATCACACCCCATTTTTAAAAATTTATTTATTTTTTGGCTGCGGTGGGTCTTTGTTGCTGCACATGGGCTCTCTCTAGTTGCGGTGAGTGGGGGCTACTCCCTAATTGTGGTGTGTGGGCTTCTCACTGTGGTGGCTTCTCTTGTTGCAGGGCACGGGCTCCAGGCTTCAGCAGTTGTAGCTCGAGGGCTCAGTAGTTGTGATACAGAAGCTTAGTTGCTCTGCAGCACGTGGGATCTTAGTTCCAGGACCAGGGACCCAACCTGTGTCCCTTACCTTGGCAGGTAGATTCCTAACCACTGGACCAGGGAAGCCCCTCACAACCCCATTTTAAACAGGCTCAGACAGGTTTGTCCAAGGCTATGCAACTGAGGGGGGACCAAAGTCCTGGCGTAAACTACACCCCACACTCCTGACTCTCCATTTCGACTTCTCTTCCAGATGTATATCCCACCATATGTGTCCATTGCCCACTCTGACTATCCGGCATAAATGCCAGCAGGTGACCACAGCCACTTGGAGACCTTCCAGGGGTGATAGGTAGGGTTGTAAAAATGAATTCTTCTCTTCGCCACCAGAGGGTGCCACTAGCACGGCACTCACGCTCTGCTTCCAGGAAAACAAAGACCCTAGAACACCCCTTCTCCTGGAGGAGCGGCTACAGTACAGGCCCAAACACTGCTGCTATTTCCCCACCCACCTCCCGCCGGGGTGGTGGGGAGAATTCTTGGAGCTCACATCCCTCTGTGAGCTTAATCTGGTGGCTCTGATGGTGAAAAGGCTGCCTGGAATGCAGGAGACCTGAGTTCAATCCCTGGGCTGGGAAGATCCTCTGGAGAAGGAAATGGCAACCCACTCCAGTATTCTTGCCTGGAGAATCCCATGGACAGAGGAGCCTGGCGGGCCACAGTCCATGAGCTCACAAAGAGTCAGACATGACTGAGCAGCTAACACTTTCACATTTTCAGTTGCCAGAGGTCTCCTTAGTTTGGGTTGTCTCTTCAGGCACATAAATTCCACACTTTCTTTTTCCAGATTTCTCACAACTAGCCCCTGGGGAGAAGTGGGCTGCATTATGGACCGCACGCTGCAGACAAGGAAACGGAGGCTCAGAGAGGTTTCGTGTTTGGTCCAGTGTCACACAGCAGGGAGTGCTCAGCTGGGGTTTGAGCACAGGTCTTTTCTTATCCTGCTTTAGAGAAAACAGGCTCAGTGAGGTGGCATGACCTGCGCAAGATAGTTGGGATAAAAAGCAGGACTGAACTCAGATCTGCCTGATAGCAAAAACCTGGCTCCCTCCCAGTTACCATCGCTTTCCCAGCCAGCTTTTGCAATCAAGCCCATCAGAGACCATTTTCTCTGACTTCTCAGCCTGTGATTATGGCCAAGGCTTGAAGGTGCTGCAGGGCTCTAATATGGGTGCACAGATGAGTGCGCTGCCCCACTCACGGGACTACATGCCACTAAAATAAGCCCCGATTTAAAGTCATGTGCCATAAGTAGTTCTTATCTCTAACAAGTGTGTGTTAGTCACTCAGTTTTGTCTGACTCTTTGTAAACCACATGGACTCTAGCCCACCAGGTTCTTCTGTTCATGGAATTCTCCAGACAAGAATACTGGAGTGGGTTGCCAATTCCTTCTCTAGGGGATCTTTTCCAACCCAGGGATCGAACCCTGGTCTCCCACATTGCAGGCAGATTCTTTATCATCTGAGCCAGCAGGGAAGCCCATCTCTAACATACATTTTTTTTAAATGACACAATTTAGAATAAAACATAAAGGAGCTGTAAATCCAAGTGCCATACCCCACTTGAGCCCCTCCCCCCAGCACCCAGGGAGGTCAGAGGGGTGTGAGCTGCTGACCCCTTTGGGAGAATGGGACCAGGGTCTATATCAGCTCCCACAGGTGGCAGAATGTGGTGACAGACACTGTGGTTCTTGCATTTTGCTAGGGACCCAAGGAGTCACTACCCCTTTCCAGGACCCAAGTTGTCCTTCGTGACATGGGTTTTCTGCAGCCAAGCCTGGCCCACTTTCTCCTTTCACTGACAGGATGCTGGGGGAAAGGTAAGGAGCCTCAGCTTGCATTTTTTAAAAAGAACTCCTTAGGGAATTCCCTGGCAGTCCAGGGGTTAGGACTCCACAGTTTCACTGCCAAGGGCCTGGGTTCAATCCCTGGTCAGGGAACTAAGATCCTACAAGCTGTGCCAGGAAAAAAAAAAATCCCTAACTCAAGAAGGCTACAAAGGAGTTGTCCCCAGGTCAGACTGGCCTTCACAGAATTATAAAGTACATCTTGAAGCAGTTGCCAACATTTACAGATTGGGAGATTTTATCTAAATGTTCAGAGTTTTGGTTTCTCTTGTAAAAGCAGGCCCTTTGGCTGAGCTGGGCTGCACCTCTGGATGGTGACAGTGGCCTGGAGCTCAGCAGCTGCTGCCCCTTTAGACCCATCTGCTTCCCAACACCTCCACACACAGCCTGAGCCCCTCATCTAGGCAATCTGCCTGGCCCTGGGCCCTCTGAGTTAAAGGACCTCCTCGGGAACCCTCTCCTCTTCACTGACATTAGAGGGGGAGGGAAGAAATATAGGGCCTGGGCCCTCGGCTCCATCCTCTCTGGACAAGGAATTGAGGAAAACTCCAGAACTTGGGCTAGATGCCCGAGGGGAGAGGATGGGGCAAGGGTACCAGGGAAGAGGGGGGCACTGAGGCAGGGATTGATAATAAAAGATGGGAAAGGGAGAGTTTCCAGAAGTGGGCCATGCTCAGCAGCATCCAGGGCCAAAGAGAGGTGGGAGAAACATGGACAAGACGCTATCTGATCAGGAGGCCCCTGCAGGCCCCGGTGAGAGCCAGATCAGTGAGTTGATGCAGTAGAGTATTCTGAGGGCCAACTTCAGCCAGATTCTCCTGTGGCAGATGTTTTCACCCCCATTTCATCACTAGAGGAAACAGAGGGCAAGCAAAGCACCCAGGGGCATGCAGTCACAAGGACCACCTGTATCCTCTCCATCCCCATCTCTCCCTAACCCGCATTTTAGCCCCAGTCTCAGAATGCATTTTCCTAAATTTGCTATGTGAATCTCAGCCATGAAATTAAGACGCTTGCTCCTTGGAAGGAAAGCTATGACCAATCTAGACAGCATATTAAAAAGCAGAGACATTAGTTTGCCAACAAAGGTTCACTTAGTCAAAGTTATGGTTTTTCCAGTGGTCATGTATGGATGTGAGAGTTGGGCCATAAAGAAAGCTGAGCGCTGAAGAATTGATGCTTTTGAACAGTGGTGTTGGAGAAGACTTTTGAGAGTCCCTTGGACTGCAAGGAGATCAAATTAGTCAATCCTAAAGGAAATCAGTCCTGAATATTCATTGGAAGGACTGATGCAGAAGCTGAAGCTCCAATACTTTGGCCACCTGATTTGAAGAACTGATTCATTAGAAAATACTCTGATGCTGGGAAAGATTGAAGGCAAGAGGAGAAGTGGATGACAGAATGAGATGGTTGGATGGCATCATCGACTTGATGGACATGAGTTTGAGCAAGCTCTGGGAGTCAGTGGTGGACAGGGAAGCCTGGTGTGCTGCAGTCCGAGGGGTTGCAAAGAGTCAGACATGACTGAGCAACTGAACTGAACTGACCTCTCCTCTTAATCTAG
Seq C2 exon
GTTCCCACTCCTATGCCCAGGGCAGAGGCCAACACCAGCCGGATGCTCAGGAATGCCACCCTGGAGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020351:ENSBTAT00000027121:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.583
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]