RnoINT0137607 @ rn6
Intron Retention
Gene
ENSRNOG00000015262 | Slc34a1
Description
solute carrier family 34 member 1 [Source:RGD Symbol;Acc:3708]
Coordinates
chr17:9753375-9759061:-
Coord C1 exon
chr17:9758966-9759061
Coord A exon
chr17:9753439-9758965
Coord C2 exon
chr17:9753375-9753438
Length
5527 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TCACCTTCCTCTGAATTTAGGCT
3' ss Score
8.59
Exon sequences
Seq C1 exon
CTGGACAAGTCTGTGATTACCAGCATTGCCGTGGGGGATGAGTCCCTGAGGAATCACAGTCTCATTCGGATTTGGTGTCAACCAGAGACAAAAGAG
Seq A exon
GTGAGTTCAGAGCCAGGTAAGACGATACCCTCTTTAGAGGTTTGCCTGTTTGTTCCAGAGACCTTGGACATCACTTAGATGCGCTGGCAATTCTTCTGCATCTGTGTAGCCATGGCGAGCGTTCGTTGGTAATCCCTCCTGGCTGCCATGCTGGCCATAGGCAAACATCATCTGTACGTTTAGCATTGCATGTAATTGATCTGGCCCAGTGGCTTTCAAAGAGCTGTTGTTCCCCAGACTAACCGCATCAATACTACCTAGGAACCTATTAGAGGTGTAAACTAGATACAGATTAGAAGAAAACCCACTGCTTAGTCCATATGCGTCCTTCCTAGAATGGTTGGATCAGAAAAGAACAAAAAACAAAAGACCCTTGGGAATGAGCCCAGTTGCTTAGTCTCCAACCTGCCCTCTAACTGCTCCGTGCTCAAGTTTGGAAACCATGGATCAAGCTCAACCCTTCGGTTTCATGGACAGAGACACAGGCCCAAGGAGGCTAACTTGCCTGGGACTACCCTGCTGCAGGGACACTTGGGGCTAGTCACTGGAGTCTGCCATGTTTGCAGCTTGAGGTTTAAGCAAGGTGGAGAGGAGGGAGAAGAGAGTGCTAGAAGGATATTGAGAAGCTTGGATCCTAGGACTCCAGCCAAGGAGCAAGTCAGTGGCTGCCACATTGGATGTGACACTCCCTGGCTCTCAGGGATGGCCCCCTGAGAGACACAGCAGTCACTGGTGCTGACAAGGGGCACTTTCACAGGGAGCCACAAGTTCATTTTTTCTGCTCAGAATGAGGAACTATCGGGATTGGCTGGGCCTTCGTGGATCAGCCATTATGCCTATGGTACCAGGCACAATAGCAAGGCGGTTAGGCACGAGGAAGTAGGCAATTAGCACACTTTCTGACTCAGCCATAAAAGGGAAAACGCTTCACCAAACCACAGTCTTCCAAATTTGCTTCTCCTTAATTATTGCATACATGAAATCGCTCCGTGTAGAAAAGCTGCGGGGAAATCAGAAGCCCACAGCAGAGGCACGGGCCCACTCCCCACCCCCACCCCCGCCTTCCCTCCTCTTTGCCGTGGATGTTCCCGGTCCTTTACCCCAGCACTCGCAGAAAACACTCTGTCAGCTCACCCCTCGGTGTTCCTTTGCATCCCAAGTGGCACACGGCATCAATGCCACCCTTCTGAGAGTTCTGCTCTGCTGAGAGTTCAAGGCAGCCTGACAACAAAAAGCCCACGTGGACAGCTTTGATGCTGGCTTTGTGATCTTCCCGTCAGCCACCTTCTCATGAGCTCTCTGGCACTCTCGGGCAAGCTCTGTGAGTCACTGCAGCCTCAGAAAGCACAGTCTGGAGAGAGGAAGAGAAAGCACATTCTGATCTAAAAAAAAAAAAAAAAAGAAAGAAAAAAAAAGAAAAAAAAAAGAAAAAAGAAAAGAAAAAAAAAAAAGCCTCAGAGAGATTTCCGGCCTGAGGTCTGTCTTGGGCAAGTCTCTACCTGTGCCCTGAACCTCCTCACCCACTGTAGTCCTGAAGCAAGACTGGCCAGGTGTGTCGTTTTACACAGATGGAAACTCAGTGTCAAGTAACTGCAGAGTTCCTCAGCTGGGCCTGCCTTCTGCTCTTTTTCACGTGTCACTTGCCAGAGCACCAGTCCAGGTCCTTGCGCTAGCAGGAAACCTCTTTCTGTAACAGTAGGTTCTCGGCTTAGAGTGTAAGGTTGGATCTGAGGACCCTGCCCTCTGCCGCCTCTTCACAGCCTCCAGCCTTCACCACGCTGGACCCAACGTTAAGCAAACTGGTCTCCAGGGTGGAGGGAGTCCTTCTCGATGGACTTTTGAGTGTTTGAGACTTGTGGATGATCGGTGACCTGGCATTGACCTTGGGATCCCTTCCGTGAGTCTCAGTGTGATAACTGACAGCTGCACCTGCCTGGTTTAAGCAGCATCTTTGGAGGACTGGCAACGGGAAGCAGCTGGTATCACATCTCCACTCTGCAGAGAAGAAATGGCCTCTCTCAGGGGGTGCACAGTGGCTTCCTGTATTATTGCTTCCTATAATGGAGGGAAGGTCTAGATCCTGATGGAAAGCACATTCGTGCATGTTTCTCCCAGATGCCGCTCTAAGGTACCCGCTTCTGTGTCCATTTCTCCTTCTGCCCACGGCGCCTTAGACTGTCACCCCACCCGCTCGGGACTGGTGGCTTGGAGATGCTCTGAGAAGTTCTCCTTTCAGCCACCAGATGGCGCTGCTAGCCCAGAGTGCTCCTCGGCTTCCAGAAGAACAAAGGGCCCCGCAGCTCGCGTAGCCTCAGAGGGGAAGCTATTGTGCAAGCCCACATCCTCTGTGGTTCTCTCCTGAGGAAGGACTCTTGAAGTATGGGAGTCCTTTGTGAGCCTAATCACCTTCTTCAGTTCCCAGAAGTGTCTCAATCTAGGGTGTCCCTGTAGGCTCTTAAATACCAACTCTCTCCGAGATGCTTCCAAGTAGTCTGTGGGGGAAAGAAGACAGCATCAGGGACTCCATCGTGGAGACAACGAAAGGCAGAGAGGTTAAGTGTGTGGCTGGCTCCATTTCACACAGCTGAGAATGGCTCAGCCACGGTGTGAGCGCAGGACTACGGAACACGCCTATGTTCTACTCCGCTGTTCCCTTTCTGTTGCCCTTCTCTACCCCAGGCTGGACCGATACATCTTGGGAACGGGACCAGATCTGGGCTTCCCAGCTCTGTGAACTAGGCCGGAGTTCCTACCTTCTCTGCCCTGTAAGATCTCCCTAAAGGATTGGTTCTCTCTCCCTTCAATTCTGTCCTAGCCTGGCGTTACAGTGAGTGGACCCTCCCTTGTCTCGCCTGCTGTCTCTCTGTTCCCCTCTTTGCACTTAGGGTCTCTGACTCCCTTTCTGGGTTCAGTTATGGTCACACAACCTCAGGAAGAAAAGTCAAGTTTCCAGAATCCCACAGGAGGGTGGAGAATGGAGTTATTGATCCGTGAGGTCCGGAGTCAAGGTTCAATCCTGAGAACCAAAAATACAAATAAACAACAACACTCCAGATATCTCTGTCCTCAGCCTAGTCCCGACCCTGTCTCAGTCAACCCTAAGGTGGGACTTATGGCCAGTTCCTCACCTGCCTCTAGCCCCTATAAGACCCAAAAAAATCCCCTCCCCAGGAGTCCTCAGGATGCAGCTCAGAGAAAGCCAGTGAGGCACGCATGCATCTCAGGAAGTCAGTTGCTTCCTAGGGCTTTGGGCTGGGGACATTCAGGAAGGTCTACCAAGTCCTTTCTGCAAAGGGCCAGGATCCACAGGTGCTTCTGCAGGAGCCTCTGGTCAGGACCTAGGAGGTCGAAGGGAAATGCTCTGGGCCTTATCTGGAAGCTCAGTTTACTTGAAGCTCTGTGGTAAGCCAGACCCAAAGTGAGGAGCATGTGAACATTTTCTCCTGTGACCTTTACGTTTTTAATTATCCCAATTTTTTCCCAAAGATTATTCGTTTTATGTACATTGGTGTTCTGTCTGCATGTACGTCTATGTACCAGATCCCCTAGAACTAGAGTTACAGACAGTTGTGAGCTGCCATGCAGATGCTGGGAATTGAACCTGGGTCCTCTGGAAGAGTGTCCTGTGCTCATAACTTTTGAGCCCCTATTATCCAGATTTAAACAGGCTCAGAGAGGTGCCATAACTGGTCTCAGAAAGTTGGTTTAAAAAGCAGATTTGAACTCAGCAAACACTTGGCTCTCCCCCTGACTAAACCCCAGCCTGCTCTCCCTGACTAAACCCCAGTCTCTCCAGAGCAGGTCAGCAGAATCCCTCACCTCATTAGCATTATTGTTTTCTTCTTCTTCTTCTTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTTCTTCTTTTCTTTTTTTTTTTTCTGGAACTGGGGACCAAACCCAGGGCCTTGCGTTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCTGTTCTCTTCTTGAGACAAGATCTCGCTCTAGTCCGGGCTGGCTTTAAACTCATGGCAGTCCTCCTGCCTCAACTCTCCAAGTGCCCATCTGGATTTCTGTCCTAGCAGATGACTTTTATCCTACATTTTGCCTAGAGTTCAGGACTTGGTGGTGCCCCAAGGCTTAGATTTAGTGAATTGGGAATAACAGCTGAGCATATTGTCTTGCTCAAGGGGGAGCATTGCACACACACACACACAAACTTCGATTTTAGAACCCGCTGTCAGATGTTGACCCGGTCAACATTGCACTGGGGTTTTTTTTTTTTGTTTTTTTTTTTTTTTGTTTTGGTTTGGTTTTACTTTTTTGATGTAGGGATTGGAACCGGGACCTTGTCCCTATAGACAAGGGCTGGACCACTGGCCCAAGCCCCAACCCAATCACACATTCTTTAAATGACCCATGGCTTGGAACAGAACCTAAAGAAGTTATAAACACCACAGTGCCAGCTCCTTCCCTTCCTGGAACTTTAAAGTGTGTCCCCATAGGCTTGTGACTCCTAAATACTTGGGGGCTGAGGCAGGAGGATGGCAAGTCCAGGGCCTACCTGGACAATTTAGCAAGACCCCCTTCTCAAAATAAATTAAAAATGAAATGAGATCTCGGATGTAGCTCAGTAGAAGGATGCCTGCTTAGTTTCTGTGTCTAAGCTCAACCCACCCTGTTGAGGGAAAAAGGCATCTGAGTAGCTACAGCATTCGTAGGAACTGAACCCAGAACTCCACAGCTGTGCTCTGTCTTCTGGAACCAGGCAGCTGGGCCGCACTGGGGTGTGTCTGTGGATGGTGACAGTGACCTGGAGCTAAATAGTTACTGTCTCTACAGACCCAACGGCCCATAATTTAGGTCGCCTGCCCCCTTTATCTACGGAATTTCCCTCACTTCACTCACAGTAGGTCCAGAAAGAAGAAAGGGGAGGGGCTAGATCCTCTGCTGTCAATCACCTCTCTCTTTTTTTTTTTTTTCCAGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCATCAATCACCTCTCTTACACTTAGATCTGAGCCTAGGCAGAACGGAGCTTGGGTTGAGTGAGCCTTAAAGAGACCATGGGGCAGGAACTGAGAAATGACGGGTGAGGACAGATGGGGATGGGGCTTTCAGAGAAGAGGTTGTGGAGGCCACTGAGAGATGGGGGAACTAGGACAAGAAGCTACTGACATGATGATTGGGGGTACCCAAGGGTCCTGGAGGTAGCCAGGGCAGGTCAGTGACGGGGTAGAATGTGTATGTACGAGGCCATATTCCTGAGGTATTTCGACCTCATCTTTTCTACATAGGATGTAGGCTCAGAGCGGGCAAGCAACAGGTCCATGATCACAGAGCCAGAAATGCATTCTGGTCCTTCCATTTCTCCGGAACCTCCCTCTTAGCTCCGCCCCCAGGCTGTGATTTTTTTTCTAGATTCTCTAAGTCACCTTCCTCTGAATTTAG
Seq C2 exon
GCTTCCACTTCTATGTCCAGGGTAGAGGCCATTGGCAGCCTTGCAAACACCACCATGGAGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015262:ENSRNOT00000033749:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]