DreINT0150680 @ danRer10
Intron Retention
Gene
ENSDARG00000036864 | slc34a2b
Description
solute carrier family 34 (type II sodium/phosphate cotransporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-030709-1]
Coordinates
chr23:1073777-1074860:+
Coord C1 exon
chr23:1073777-1073872
Coord A exon
chr23:1073873-1074739
Coord C2 exon
chr23:1074740-1074860
Length
867 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGC
5' ss Score
9.44
3' ss Seq
GGATTTTCTGTCTGTTTCAGAAC
3' ss Score
10.97
Exon sequences
Seq C1 exon
CTGGACACCTCTGTGATTCGTGACATCGCCACTGGAGACCCTGCTGCCCGAAACAAAAGTTTGATCAAGATCTGGTGTAAAACGGAAAAAATTACG
Seq A exon
GTGAGCAATCTGAAACTGGATTACTGGATAAAACACTTCACTGTGCCGAGGCTTGTTTGATTCTCTGCAGTCACAAGAGAAATGGTGTTTATGACGATATCCAAGCTGATTTTCTTTTTAATGATCTAATTTCCTGAAACTTTCCAGGTAGAGGACATCCATTATCTATACTCTAGCATCTTCCCTTGCTGACTACGTAGACGGCTGCAATAAAAGGCAGCTTGTTAATTGGAATTAAGCCTTGTAAATGTCGTCAGTGCAGCATAATTTGAGATAACCATTGCCAGTGTGATACTGTAGTTTATAATAGCCAGCTTCTGCATGTGGAAAACCTCATTTTTAAACCTGTGTCAGTCCAGTTTTCAGAATTGAAGTTTAGTTCAGTGTGGTTTAATTTTCACTCCTGAAAGTCCAAACACTGAAGAGCAAATCCATCTATGCATATCTCCACAAGTGCCTATCCCAGTCCAATATACATGTTCAACATTGCGTATCCTGCGACATGAATATTGCGAAGGATGGCATTGCGTTATCAATGCTGAAACCAGATAATGGTCAGCCCTAATACATGTTAAGAAATGTCATGATTGCAATTCTGAACAACATTGCACATTTTTCCAGTGTCCGTTCAGCTTATGTAAAGTTTAACGGGTTTAAAATGTACAAATATATTAATTCTAGTTTAATTCGTGGTTTCAAAAATACAGAAATGGTAAACATTACTGGATGTTATATTATAATATTGTTATTTCAATACTCAACATTTTTCTAGTGTCATGCAGCCCTAGTGCAGAAGATTCAGACGGGGGGTGGGGGAGTGTTTCTTTCCATCAGGTGCCGTTTGTGAGGATTTTCTGTCTGTTTCAG
Seq C2 exon
AACCTGGTGAACGTGACCGTCCCGGGAATCGCAAACTGCACTCCGGACGCCCTGTGCTGGGTGGATGGAGACTTGATCTGGACCCAAAAGAACCAAACCGATACCATCTACTTGAAGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036864:ENSDART00000053527:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGACACCTCTGTGATTCGTG
R:
TCTTCAAGTAGATGGTATCGGTTTGG
Band lengths:
214-1081
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]