RnoINT0137619 @ rn6
Intron Retention
Gene
ENSRNOG00000004626 | Slc34a2
Description
solute carrier family 34 member 2 [Source:RGD Symbol;Acc:620889]
Coordinates
chr14:60261779-60262487:-
Coord C1 exon
chr14:60262392-60262487
Coord A exon
chr14:60261900-60262391
Coord C2 exon
chr14:60261779-60261899
Length
492 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
TGTTTGTCATTGTTGTTTAGATT
3' ss Score
6.91
Exon sequences
Seq C1 exon
CTGGATAAAAAAGTCATCCAACAAATTGCAATGGGTGACTCAGAAGCCCAGAACAAGAGCCTGATCAAGATCTGGTGTAAAACTATAAGCAATGTG
Seq A exon
GTAAGTGTGGAAACGGTGGATGAGTAAGTTATCACTGGGATGAATAAGTGTGTCACTGGAAGGGTTCAAAGCAGCAAGTCAGAAGTCAGGGAGGGGGAAAAATTGGGCACCTGGAAACCTGGCCTCTGCCTTTCAGGGCCACCTTTGCATCACTATTAGATGCTTGCTCCTTGGTCTTGTGTATGTCTCATGGAAGGCTGACTCTTGGCAGCAGGGGCATCTTGCTTTCCAGACTGTTTCTGAACTGGCATACAATTTATGACTTGCTCTAGGAATTTGCCCAACCTGCTGTGCAGTGGGGTACAGCTCACCCTTAATTCTGGGGTGTAGCATGTCCATGCATGCATACATGTTCTGCTAAAGACTGGTGATGAAGGGAAGGAAAGTACCCTGCTATGGAGCCATTGTAGAAACCCAAGGATAATGTCCCATTGGTCCCCACTTTGTTATTTCCCACCATGGTTGCACCTCATGTTTGTCATTGTTGTTTAG
Seq C2 exon
ATTGAGGAGAATGTCACTGTCCCCTCGCCTGATAACTGCACCTCTCCTTCATATTGCTGGACTGATGGCATACAGACCTGGACCATCCAGAATGTGACCGAGAAGGAGAACATTGCTAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004626:ENSRNOT00000048509:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTCATCCAACAAATTGCAATGGG
R:
TTTAGCAATGTTCTCCTTCTCGGT
Band lengths:
206-698
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]