GgaINT0072512 @ galGal4
Intron Retention
Gene
ENSGALG00000014372 | SLC34A2
Description
sodium-dependent phosphate transport protein 2B [Source:RefSeq peptide;Acc:NP_989805]
Coordinates
chr4:73042457-73045212:-
Coord C1 exon
chr4:73045117-73045212
Coord A exon
chr4:73042578-73045116
Coord C2 exon
chr4:73042457-73042577
Length
2539 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
CTTTCTCTGGCAATCTTTAGACA
3' ss Score
5.85
Exon sequences
Seq C1 exon
CTTGATAAATCTGTAATAAATGCAATCGCTACTAATGACGAATCAGCAAAAAACAAAAGCCTGGTAAAGGTTTGGTGCATAACTGAAACCAATGTG
Seq A exon
GTGAGTATTATGTTAAATTAGTTGTCAGACTCCCTAGGAAAGATGTTACTGATCCGTAGCTGACACTTCTTATCATACTAATGTGAAATTAGATTTTTAAATGAGTATTTGTTGCAGCAGAAGAATGAACACAATATAATCTAGCTTTTGCATCACTTAAACCAAACATGGCATTCCAGTAGTGAGCTTGACTTGGTTGCTTTAGGTACTGTACCATGCAGGACCTTGCTTATGAGAACTTGTGGTTTGGAGCCAAGCCTTTCACTTCTTTCACGATCAAATGCATTTAAACTTGGTACTTCTATCAACTCCCTGAAAGTGGAAAAAATCTGCAATGGAGGACCAAGAAACTTTTTGGCCACCATTCATCTGTCCAATTTAAGCACCTAGTCTAATATGTGCTAGAGTAATCTGCTTGCAGTTGGTTACCTCATCTTTCTTGGAAAACTGCCCTCAGACAAAGCCTCTCTGGGGCTAAAATCGTTTGTTCTTCACCTGAGTAACCCTGCAGCATGAAGGAAGTTGTTGCCCAGGGTGACACCAATGAGTACTGTGGTTGGCCATGGAGCTGTGTTTGATTTGTGTTGTTCAGCCAAACTGACAGCTAGAGCATTCTCTTGGACCTTTACTTGTTAGCGTATGTATAAAACTAACTCCTGAAGTCATAATGCAGAAGATACTTGAGGACACGCAGCAGAGATTAAAATTCAGTGCTTGCACTTTCAGAGGAGCCCAGCTCCTATTGAATGACAGTCTGGATGGCCAGTGAAATGTTAGCTATGGGAGATAGTGGTAGGAGCAGAGCCATGCTAATGTGAAACTCCGCTCGGGTTACCCTGCTGAAGCACTGGGTCTTTAATCCCAGGCAAGGCAGAGGCTGGGGCAGGCCTACTGCTTCCAGCCCCCTGGCAGCTCTTGGTTGCCCTGTTTGCTGCACCGAGCTCAGCAAGGCCTGCGCCCTGGCCTTCTGCAGTCCTCCTACTCTTAGAAGGCAAGTGATGGCACAGGGAGCATAGGCTGAGTTTGCACTTCAACACTAGACAATTTTTCTGTAGGTGACTGTGTTTTGGCTATATAATCACTGCCCCAGTGTACAATCAAATTACACAAACACACAAAACCCCTACAAGTCTGAACTGAGCTTGGTTGGAGAAGAGGAAGATATTTAACTGATTTGCATTCCTAGTAAGTTAAACTAATTTCTGGCTATAATATTTAAATAGATTTACATCAAGGAAGAATGTACGCAGACTGGGTGTATTTAAAGCAGAAGATAAGGACAGACGTTTCAGTCTGATGAAGCTGCTTTGATACCACATTCTCTGAAAGAATTTCAGAGAACTGTGTTGTAATTATATTGGCTGATGTTTTCAGCAGGCTGGAGACCAGGTGCTCCCTGATGTTGTGGGGCCACCCCTGACTTTGTCTATCTTGGGCTGTTCTGCATCAGCTGGAGGGGAAATGTGAATGCTGCAACAAAATAGGATCTGATGTGATCTCTCTTTCCCCATTTCTGAAACAGAGTATCACTCCAACATATCTTACAGATAGCTCCTGTTCAGCTGAGTGTAGTTCAGAGTCCATTTTGCTGTTAGCTATATTGATATGGGGAAGTACAGTTCAGTCACGGAACTGTTTCTTAATCTACGTAAGGACCTGTGGACTTAGTGTCATCTGGACTATCAGCTGGAGCTCCTGTAGGCAAGGTTGTATTTTATAAAGAGAAATTCAGGTTCAAGTCAATAGTACTAGTACTAATCATGATGAAAACGATTAGCTCTTAGAGAATCCTTGAGCTTTAGAAAATAAGGTAGTAGCTGTGTTACTACTGGTGGGAAAACAGGCACACAAAGGCATTGTGACCAAGCTATGCTCATTCAGCAGCAGATACTGCACTAATGTTAGGATTGTCTGAGTCACAGTCCTGTGCAATGCTCATCAGACCATTTCAGCATCACAGAATCACCGAGTGGCTGAGGTGGGCAGGGGCCATCTCTTCCAACCCTTGCTCCAGCAGGGATGCACCCAAGTGGGGTTCCCAGAGGCACATCCAGGTGGCTTTTGAAGATCTCCAGGGAGGCTCCACAGCCTCTGGACAATTAACTGCAGATAAGCTGACAGTAAAGAGGTAGAAATTGTTTTGATCCAAGGAAGTTGTGGCAGTGACCGGAAAGGAATGCCTTTGTGCCTCAGCTGCAGGTTGATGTGAATTTCTTTCCATGAACCCTGAGATCAGTTATTAAGCTTCTTAGCTCCTGCCACTGTGGTGCTATGATTGTAATGATGTAGAAGGTTTGGGGAATATTTTTCACCTTTAAAAGTTGTGTTGAACAACTTGAGTGAAAGCACAGTTGTTTATTTGGAGAATACAAGAAAATCTGTCATGTCATTAATGGGGTGCAATTGAGTTGCACTCCAGCTTACAAATCTTCCTTTAGTTGATGAAGTCTTGGTTGCAGTAAAAAACCTACAACTTTGTATGAGGTCTTAATGAACACTGTAGTTGCCTGAATCAACTGCTTTCTCTGGCAATCTTTAG
Seq C2 exon
ACACTGCAGAATGTCACAATTCCACCTTCAGAGAACTGCACGTCTTCTGAACTTTGCTGGTCAGAAGGAAATGTGACGTGGACCATGAAAAACATATCTGAAACAGAATATATCACTAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014372:ENSGALT00000023222:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]