BtaINT0135300 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001545 | SLC34A2
Description
solute carrier family 34 (type II sodium/phosphate cotransporter), member 2 [Source:HGNC Symbol;Acc:HGNC:11020]
Coordinates
chr6:46743390-46744017:+
Coord C1 exon
chr6:46743390-46743485
Coord A exon
chr6:46743486-46743896
Coord C2 exon
chr6:46743897-46744017
Length
411 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
TTCTCATGTTTGCCACCCAGACT
3' ss Score
6.01
Exon sequences
Seq C1 exon
CTGGATAAAAGTATTCTCAACCAAATTGCAATGAATGATGAGTCGGTCCAAAACAAAAGTATGATCAAGATTTGGTGCAAAACTTTTACCAACGTG
Seq A exon
GTAAGTTTCTAAGAATATTGCTGGCTGGGTTAGCTCTTTTGTCTGTACTGGATAAAGCAAGATCTTGCCTTCAGACTGGGCATATAAAAGGTTGGGAGAAAGAAAAATCGAGGATTCCTGAAAAGTCAAAACTAACCAGTGAGAATCCTTAAGTCGTTGATTTCTAGATGGACAAACATGCTGTAGGACAGACAGGACCAGCCCACATCATGGACATGTTATTCCTGGCTAATTATGTTCATGTCTCCTGGCTTATCTCTGGCTGCCACCTTGCTTGCATTTATAGAGGGACTTGTGAAAGCAGTGCCCCACACCTATGGAGTCTCCCGTGATGCCCCGAATTTCCCTCCATTCCCCACCAGAAGTGAGGGTTGTAGACAATGCATAGTATTTCTCATGTTTGCCACCCAG
Seq C2 exon
ACTGAGAGAAATGTCACCGTCCCCTCGCCTGAGAACTGCACCTCCCCTTCTCTCTGTTGGACGGATGGTTTGTACACCTGGACCATCAAGAACGTGACCTACAAGGAGAACATTGCCAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001545:ENSBTAT00000002023:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTATTCTCAACCAAATTGCAATGA
R:
TGGCAATGTTCTCCTTGTAGGT
Band lengths:
206-617
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]