BtaEX0033081 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001545 | SLC34A2
Description
solute carrier family 34 (type II sodium/phosphate cotransporter), member 2 [Source:HGNC Symbol;Acc:HGNC:11020]
Coordinates
chr6:46743390-46745366:+
Coord C1 exon
chr6:46743390-46743485
Coord A exon
chr6:46743897-46744017
Coord C2 exon
chr6:46745199-46745366
Length
121 bp
Sequences
Splice sites
3' ss Seq
TTCTCATGTTTGCCACCCAGACT
3' ss Score
6.01
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
Exon sequences
Seq C1 exon
CTGGATAAAAGTATTCTCAACCAAATTGCAATGAATGATGAGTCGGTCCAAAACAAAAGTATGATCAAGATTTGGTGCAAAACTTTTACCAACGTG
Seq A exon
ACTGAGAGAAATGTCACCGTCCCCTCGCCTGAGAACTGCACCTCCCCTTCTCTCTGTTGGACGGATGGTTTGTACACCTGGACCATCAAGAACGTGACCTACAAGGAGAACATTGCCAAGT
Seq C2 exon
GCCAGCACATCTTCGTGAATTTCAACCTCTCAGATGCTATTGTTGGCACCATCCTGCTGATCACCTCCCTGCTGATCCTCTGTACCTGCCTGATCCTAATTGTCAAGCTCCTGGGCTCTGTGCTCAGGGGGCAGGTGGCTGCTGTCATCAAGAAGACAATCAACACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001545_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0269010=Na_Pi_cotrans=PU(19.1=47.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTATTCTCAACCAAATTGCAATGA
R:
TTCTTGATGACAGCAGCCACC
Band lengths:
242-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development