RnoEX6042535 @ rn6
Exon Skipping
Gene
ENSRNOG00000004626 | Slc34a2
Description
solute carrier family 34 member 2 [Source:RGD Symbol;Acc:620889]
Coordinates
chr14:60260510-60262487:-
Coord C1 exon
chr14:60262392-60262487
Coord A exon
chr14:60261779-60261899
Coord C2 exon
chr14:60260510-60260677
Length
121 bp
Sequences
Splice sites
3' ss Seq
TGTTTGTCATTGTTGTTTAGATT
3' ss Score
6.91
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
CTGGATAAAAAAGTCATCCAACAAATTGCAATGGGTGACTCAGAAGCCCAGAACAAGAGCCTGATCAAGATCTGGTGTAAAACTATAAGCAATGTG
Seq A exon
ATTGAGGAGAATGTCACTGTCCCCTCGCCTGATAACTGCACCTCTCCTTCATATTGCTGGACTGATGGCATACAGACCTGGACCATCCAGAATGTGACCGAGAAGGAGAACATTGCTAAAT
Seq C2 exon
GCCAGCACATCTTCGTGAATTTCAGCCTCCCAGACCTCGCTGTGGGCATCATCCTGCTCACTGTCTCCCTGCTGATCCTTTGCGGCTGTCTGATCATGATTGTCAAACTGTTGGGTTCTGTGCTCAGGGGACAGGTTGCCACTGTCATCAAGAAGACCCTTAATACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004626-'7-13,'7-10,8-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0269010=Na_Pi_cotrans=PU(19.1=47.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCATCCAACAAATTGCAATGGGT
R:
GGGTCTTCTTGATGACAGTGGC
Band lengths:
243-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]