GgaEX6035784 @ galGal3
Exon Skipping
Gene
ENSGALG00000014372 | Q6TQF9_CHICK
Description
NA
Coordinates
chr4:75887777-75891401:-
Coord C1 exon
chr4:75891306-75891401
Coord A exon
chr4:75888646-75888766
Coord C2 exon
chr4:75887777-75887944
Length
121 bp
Sequences
Splice sites
3' ss Seq
CTTTCTCTGGCAATCTTTAGACA
3' ss Score
5.85
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
CTTGATAAATCTGTAATAAATGCAATCGCTACTAATGACGAATCAGCAAAAAACAAAAGCCTGGTAAAGGTTTGGTGCATAACTGAAACCAATGTG
Seq A exon
ACACTGCAGAATGTCACAATTCCACCTTCAGAGAACTGCACGTCTTCTGAACTTTGCTGGTCAGAAGGAAATGTGACGTGGACCATGAAAAACATATCTGAAACAGAATATATCACTAAAT
Seq C2 exon
GCCGGCATCTCTTTGCAGAAACAGACCTGCCTGATCTTGCCATCGGTCTCATACTTCTGGCTTTGTCCCTGCTTGTTCTTTGCTCCTGTTTGGTGATGATCGTTAAGCTGTTAAACTCTGTGCTTAAAGGACAAGTAGCAAGTGTTATCAAGAAGACAATCAACACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014372-'11-12,'11-10,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0269010=Na_Pi_cotrans=PU(19.3=47.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAATCGCTACTAATGACGA
R:
CAGTGTTGATTGTCTTCTTGATAACA
Band lengths:
244-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]