HsaEX6083853 @ hg19
Exon Skipping
Gene
ENSG00000157765 | SLC34A2
Description
solute carrier family 34 (sodium phosphate), member 2 [Source:HGNC Symbol;Acc:11020]
Coordinates
chr4:25672360-25674876:+
Coord C1 exon
chr4:25672360-25672455
Coord A exon
chr4:25673223-25673343
Coord C2 exon
chr4:25674709-25674876
Length
121 bp
Sequences
Splice sites
3' ss Seq
TTGTCATGTTTGTCATCCAGACC
3' ss Score
7.41
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
CTGGATAAAAAAGTTATCAGCCAAATTGCAATGAACGATGAAAAAGCGAAAAACAAGAGTCTTGTCAAGATTTGGTGCAAAACTTTTACCAACAAG
Seq A exon
ACCCAGATTAACGTCACTGTTCCCTCGACTGCTAACTGCACCTCCCCTTCCCTCTGTTGGACGGATGGCATCCAAAACTGGACCATGAAGAATGTGACCTACAAGGAGAACATCGCCAAAT
Seq C2 exon
GCCAGCATATCTTTGTGAATTTCCACCTCCCGGATCTTGCTGTGGGCACCATCTTGCTCATACTCTCCCTGCTGGTCCTCTGTGGTTGCCTGATCATGATTGTCAAGATCCTGGGCTCTGTGCTCAAGGGGCAGGTCGCCACTGTCATCAAGAAGACCATCAACACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157765-'14-15,'14-14,15-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0269010=Na_Pi_cotrans=PU(19.3=47.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCCAAATTGCAATGAACGA
R:
TGATGGTCTTCTTGATGACAGTGG
Band lengths:
242-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)