HsaEX6083853 @ hg38
Exon Skipping
Gene
ENSG00000157765 | SLC34A2
Description
solute carrier family 34 member 2 [Source:HGNC Symbol;Acc:HGNC:11020]
Coordinates
chr4:25670738-25673254:+
Coord C1 exon
chr4:25670738-25670833
Coord A exon
chr4:25671691-25671721
Coord C2 exon
chr4:25673087-25673254
Length
31 bp
Sequences
Splice sites
3' ss Seq
TCCAAAACTGGACCATGAAGAAT
3' ss Score
-2.64
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
CTGGATAAAAAAGTTATCAGCCAAATTGCAATGAACGATGAAAAAGCGAAAAACAAGAGTCTTGTCAAGATTTGGTGCAAAACTTTTACCAACAAG
Seq A exon
AATGTGACCTACAAGGAGAACATCGCCAAAT
Seq C2 exon
GCCAGCATATCTTTGTGAATTTCCACCTCCCGGATCTTGCTGTGGGCACCATCTTGCTCATACTCTCCCTGCTGGTCCTCTGTGGTTGCCTGATCATGATTGTCAAGATCCTGGGCTCTGTGCTCAAGGGGCAGGTCGCCACTGTCATCAAGAAGACCATCAACACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157765-'21-19,'21-18,22-19
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0269010=Na_Pi_cotrans=PU(19.3=47.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGTCTTGTCAAGATTTGGTGCA
R:
CCAGCAGGGAGAGTATGAGCA
Band lengths:
116-147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains