MmuEX6017688 @ mm10
Exon Skipping
Gene
ENSMUSG00000029188 | Slc34a2
Description
solute carrier family 34 (sodium phosphate), member 2 [Source:MGI Symbol;Acc:MGI:1342284]
Coordinates
chr5:53064799-53067734:+
Coord C1 exon
chr5:53064799-53064894
Coord A exon
chr5:53065497-53065617
Coord C2 exon
chr5:53067567-53067734
Length
121 bp
Sequences
Splice sites
3' ss Seq
TGTTTGTCATTGTCATTTAGACT
3' ss Score
6.1
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
CTGGATAAAAAGGTCATCCAACAAATCGCAATGGGTGACTCAGCGGCCCAGAACAAGAGCCTGATCAAGATCTGGTGTAAAAGTATAACCAATGTG
Seq A exon
ACTGAGATGAATGTCACCGTCCCCTCGACTGATAACTGCACCTCTCCTTCATATTGCTGGACTGATGGCATACAGACCTGGACCATCCAGAACGTTACCCAAAAGGAGAACATTGCTAAAT
Seq C2 exon
GTCAGCACATCTTCGTGAACTTCAGTCTCCCAGACCTTGCTGTGGGCATCATCTTGCTTACTGTCTCCCTGGTGGTCCTCTGTGGCTGTCTGATCATGATAGTCAAGCTGTTGGGTTCTGTGCTCAGGGGACAAGTCGCTACTGTCATCAAGAAGACCCTGAATACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029188-'15-21,'15-14,17-21=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0269010=Na_Pi_cotrans=PU(19.3=47.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCATCCAACAAATCGCAATGGG
R:
GGGTCTTCTTGATGACAGTAGCG
Band lengths:
243-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types