DreINT0150666 @ danRer10
Intron Retention
Gene
ENSDARG00000012903 | slc34a2a
Description
solute carrier family 34 (type II sodium/phosphate cotransporter), member 2a [Source:ZFIN;Acc:ZDB-GENE-000524-1]
Coordinates
chr1:13752086-13752352:+
Coord C1 exon
chr1:13752086-13752181
Coord A exon
chr1:13752182-13752267
Coord C2 exon
chr1:13752268-13752352
Length
86 bp
Sequences
Splice sites
5' ss Seq
ACGGTAATG
5' ss Score
6.53
3' ss Seq
TCTGTTGTGTCATTTTATAGACT
3' ss Score
8.94
Exon sequences
Seq C1 exon
CTGGACGAGACTGTGATAAGCGGCATTGCGGTTGGCGATCCCGAAGCCAGAAATAAATCTCTTATCAAGGTCTGGTGCCACACAGCCTCAAACACG
Seq A exon
GTAATGATCGGAATTAAACAGAATAAAAAAAGTCATTATTTTGTGTCAAAACCTCATTCTCATTTTTCTGTTGTGTCATTTTATAG
Seq C2 exon
ACTCTCCAGAATGTGACCACAACAAACTGCACTGATCTTTGTTGGGAATTGAAGAATGTTACAGAAATTATAAATATTAAAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012903:ENSDART00000024328:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACGAGACTGTGATAAGCGG
R:
TCTGTAACATTCTTCAATTCCCAACA
Band lengths:
159-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]