HsaINT0152532 @ hg38
Intron Retention
Gene
ENSG00000198569 | SLC34A3
Description
solute carrier family 34 member 3 [Source:HGNC Symbol;Acc:HGNC:20305]
Coordinates
chr9:137233633-137233941:+
Coord C1 exon
chr9:137233633-137233722
Coord A exon
chr9:137233723-137233862
Coord C2 exon
chr9:137233863-137233941
Length
140 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGG
5' ss Score
9.35
3' ss Seq
GTCCTCCCTGCCCTCCCCAGACC
3' ss Score
10.43
Exon sequences
Seq C1 exon
TTGGACTCCGACATGATCATGAGCAGTGCCACAGGCAACGCCACTAACAGCAGTCTCATTAAGCACTGGTGCGGCACCACGGGGCAGCCG
Seq A exon
GTGAGGCACCCAACCCTAGGCCCTCACTGACCCCCAACCTCCCACCTGCTGAGTCATCCCGCCCCACCCACCCTCACCTCGAGCCCTCTGACCTCTGTCTGCCCACTGAGCCTGTCCTGAGTCCTCCCTGCCCTCCCCAG
Seq C2 exon
ACCCAGGAGAACAGCAGCTGTGGCGCCTTCGGCCCGTGCACAGAGAAGAACAGCACAGCCCCGGCGGACAGGCTGCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198569:ENST00000361134:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.037
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGACTCCGACATGATCATGA
R:
CCGGGGCTGTGCTGTTCTT
Band lengths:
154-294
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains