MmuEX0031906 @ mm9
Exon Skipping
Gene
ENSMUSG00000026946 | Nmi
Description
N-myc (and STAT) interactor [Source:MGI Symbol;Acc:MGI:1928368]
Coordinates
chr2:51816091-51829014:-
Coord C1 exon
chr2:51828429-51829014
Coord A exon
chr2:51828108-51828147
Coord C2 exon
chr2:51816091-51816180
Length
40 bp
Sequences
Splice sites
3' ss Seq
TATTTGTATTTCTTTGGCAGGTG
3' ss Score
8.61
5' ss Seq
TATGTAAGT
5' ss Score
6.69
Exon sequences
Seq C1 exon
TGACGGAAGCCAGCTATTTTTCTAGCAAAGGAAAAGTTCACATCTAGCGATGTGTTTGTTTACAAAATCTTCACAACAAAAACAAAGCTTAGAAGAAAACTTTCAAGGGTCATAAAATCCAACCCAGGAAGCAGCTTTCTCAGCTTCCTGGTTTATCTTGTGCTTGTGTCAAACTTTATAACCGTCTAAAAAGTTACAGAGAGAGGATTTGCATAGAGAGCTCTGGTTTCCATCCAGCTTTTCAACAGCGTGTTCCGCATAATGCACATAAATAAGCTTTTCTAAGCAGGTCTCGGAGTTACTGCCAATAATAAGAGACAGCAGCAATGGCGCCCTGGACGAAGTCCTCAGGGCATGGAGCAGAAGCATCCTGTTTCTAATAACCGAAAGTGAAAGTAAGGCCTGGGACTGAGCGCTGCTCGTCGCTGAAGCCAGGTTAGTGTTTTCGAGGTAGAGTTCAGTTCTAAGGCACCGGCTTCCGGGAGCTGCGCAGCGAGCGG
Seq A exon
GTGCTGAGTTCTGTAGTCCTGCCTCACTTTTTCAGAATAT
Seq C2 exon
AGAGTCATGGATGCTGATAAAGACAACATAAAGCAAGCTTGTGATGAGCGCTCAGCAGAGATGGACGATATGAGAGGCGAACAGAGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026946_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0500810=V-SNARE=PU(36.2=89.3),PF061568=DUF972=PU(34.7=89.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGAAGCCAGGTTAGTGTT
R:
CATCTCTGCTGAGCGCTCATC
Band lengths:
140-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: