MmuEX0031906 @ mm10
Exon Skipping
Gene
ENSMUSG00000026946 | Nmi
Description
N-myc (and STAT) interactor [Source:MGI Symbol;Acc:MGI:1928368]
Coordinates
chr2:51960571-51973494:-
Coord C1 exon
chr2:51972909-51973494
Coord A exon
chr2:51972588-51972627
Coord C2 exon
chr2:51960571-51960660
Length
40 bp
Sequences
Splice sites
3' ss Seq
TATTTGTATTTCTTTGGCAGGTG
3' ss Score
8.61
5' ss Seq
TATGTAAGT
5' ss Score
6.69
Exon sequences
Seq C1 exon
TGACGGAAGCCAGCTATTTTTCTAGCAAAGGAAAAGTTCACATCTAGCGATGTGTTTGTTTACAAAATCTTCACAACAAAAACAAAGCTTAGAAGAAAACTTTCAAGGGTCATAAAATCCAACCCAGGAAGCAGCTTTCTCAGCTTCCTGGTTTATCTTGTGCTTGTGTCAAACTTTATAACCGTCTAAAAAGTTACAGAGAGAGGATTTGCATAGAGAGCTCTGGTTTCCATCCAGCTTTTCAACAGCGTGTTCCGCATAATGCACATAAATAAGCTTTTCTAAGCAGGTCTCGGAGTTACTGCCAATAATAAGAGACAGCAGCAATGGCGCCCTGGACGAAGTCCTCAGGGCATGGAGCAGAAGCATCCTGTTTCTAATAACCGAAAGTGAAAGTAAGGCCTGGGACTGAGCGCTGCTCGTCGCTGAAGCCAGGTTAGTGTTTTCGAGGTAGAGTTCAGTTCTAAGGCACCGGCTTCCGGGAGCTGCGCAGCGAGCGG
Seq A exon
GTGCTGAGTTCTGTAGTCCTGCCTCACTTTTTCAGAATAT
Seq C2 exon
AGAGTCATGGATGCTGATAAAGACAACATAAAGCAAGCTTGTGATGAGCGCTCAGCAGAGATGGACGATATGAGAGGCGAACAGAGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026946_MULTIEX1-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGAAGCCAGGTTAGTGTT
R:
CATCTCTGCTGAGCGCTCATC
Band lengths:
140-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types