MmuEX0048536 @ mm9
Exon Skipping
Gene
ENSMUSG00000009563 | Tor2a
Description
torsin family 2, member A [Source:MGI Symbol;Acc:MGI:1353596]
Coordinates
chr2:32614191-32616236:+
Coord C1 exon
chr2:32614191-32614456
Coord A exon
chr2:32615047-32615222
Coord C2 exon
chr2:32616109-32616236
Length
176 bp
Sequences
Splice sites
3' ss Seq
TCCTGTCTCTACCCTCATAGAAG
3' ss Score
6.78
5' ss Seq
CAGGTCTGG
5' ss Score
5.06
Exon sequences
Seq C1 exon
GTCTGGAATGTGACCTGGCTCAACACCTGGCTGGCCAGCATTTGGCCAAGGCCCTGGTGGTGAAGTCACTGAAGGCCTTTGTACAGGACCCAGCCCCCAGCAAGCCGTTGGTCCTTTCCCTGCACGGCTGGACAGGCACCGGGAAGTCCTACGTTAGCTCCCTGCTGGCACAGCATCTCTTCCGGGATGGCCTTCGCAGCCCTCACGTCCATCACTTCTCCCCTATCATCCATTTCCCACATCCCAGCCGCACTGAGCAGTACAAG
Seq A exon
AAGGAGCTCAAGAGCTGGGTTCAGGGGAACCTCACTGCCTGTGGCCGATCCCTTTTCCTCTTCGATGAGATGGACAAGCTGCCTCCTGGCCTGATGGAAGTCCTGCAGCCCTTCCTGGGCCCTTCTTGGGTTGTGTATGGGACCAACTATCGCAAAGCCATCTTCATCTTTATCAG
Seq C2 exon
CAATGCTGGTGGTGAGCAGATCAACCAGGTGGCCTTGGAGGCCTGGCGCAGCCACAGGGACAGGGAAGAAATCAGCCTACAGGAGGTGGAGCCAGTAATCTCCCGAGCTGTGATGGACAACCCTCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009563-'5-7,'5-4,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.004 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF063096=Torsin=FE(69.8=100)
A:
PF063096=Torsin=PD(15.9=33.9)
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTGAAGTCACTGAAGGCC
R:
CCACCTGGTTGATCTGCTCAC
Band lengths:
242-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: