GgaEX0006836 @ galGal3
Exon Skipping
Gene
ENSGALG00000004996 | TOR2A
Description
NA
Coordinates
chr17:5553407-5555332:+
Coord C1 exon
chr17:5553407-5553671
Coord A exon
chr17:5554677-5554852
Coord C2 exon
chr17:5555205-5555332
Length
176 bp
Sequences
Splice sites
3' ss Seq
CTGGTGGATACTTTTCCTAGGAG
3' ss Score
3.83
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
TCTGGAGTGCGAGCTGGCCGTGACCCTGGTGGGGCAGCCCCTGGTGAGGCGGCAGCTGATGGAGGGACTGAGGCAGTTCCTGGAGAAGCGCAGCCCGGAGAAGCCCCTCGTCATGTCCTTCCACGGCTCCACCGGGACGGGGAAAACCTTTGTGAGCGCCATGCTGGTCCGGCACCTCTTCCCCGAGGGGCTGCAGAGCCCCCACGTCCACCAGTTCTCCCCCATCGTGCACTTCCCGCACGCGGAGCACGTGGAGCGCTATAAG
Seq A exon
GAGAACCTGAAGCACTGGATCCAAGGGAACCTGACCAACTGCGGACGGTCGGTCTTTCTCTTTGAGGAGATGGACAAGATGCACCCGGGCCTGATTGATGTGATCATGCCATTCCTGGGACCCTCCTGGGTCGTGTATGGGACCAACTACCGCAAAGCAATCTTCATCTTCATAAG
Seq C2 exon
CAATGCAGGAGGAGAGCAGATCAATGAAATGACACTGGATCTCTGGCGTGCCCACCAGGACCGGGAGGAGATCAGCCTGCAGGACATGGAGGCAGCCATCTCCAAAGCGGTGTTTGAGAACCCTCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004996_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACGGGGAAAACCTTTGTGA
R:
GAGGGTTCTCAAACACCGCTT
Band lengths:
256-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]