DreEX6014246 @ danRer10
Exon Skipping
Gene
ENSDARG00000100559 | tor2a
Description
torsin family 2, member A [Source:ZFIN;Acc:ZDB-GENE-050913-60]
Coordinates
chr5:64427071-64429362:-
Coord C1 exon
chr5:64429097-64429362
Coord A exon
chr5:64427338-64427513
Coord C2 exon
chr5:64427071-64427198
Length
176 bp
Sequences
Splice sites
3' ss Seq
TTGTCTTGTTTTGTGCACAGTCA
3' ss Score
7.72
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GTTTAGAGTGGGATCTTTATAAAAATCTTTATGGACAGCATATGGCTCAGGACATTGTCTCAGAAGCGGTGGTGAACTTTTTACAAAATGAAAACCCAGACAGACCACTAGTGCTGTCTTTCCATGGATCATCCGGGACTGGCAAAAGTCTAGTCAGCTCAATGATTGGACGACACATCTATGGAACGGCTATGGGGAGTCCATACATCCATCAGTTTATTCCCACATTACACTTTCCTTCAGCCGACAGGGTGCTACAGTACAGG
Seq A exon
TCAGATCTAAAGCGACGGGTTGAGAAAAGCCTCACCGCTTGCGCTCGTTCAATCTTCATCTTTGATGAGATGGAGAAAATGCCTCCAGGTGTGATCGACGTTTTAGAACCGCATTTAGGCCCCTATCACATTCTCTTCCAGACCAACTACCGCAAGGCCATTTATATATTCATCAG
Seq C2 exon
TTCTGCAGGTGAGGAGATAGTGAACAGAATTGCATTAGAGAGTCGTCGGGCGGGTCGAGATCGAGAGGAAATTCAGCCTGATGAGCTGGAGGACAGTATTGCTGATGCTGTTTATAATAACAAGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100559-'2-3,'2-1,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.159
Domain overlap (PFAM):
C1:
PF063096=Torsin=FE(69.8=100)
A:
PF063096=Torsin=PD(15.9=33.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGACAGACCACTAGTGCT
R:
TTTCCTCTCGATCTCGACCCG
Band lengths:
243-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]