BtaEX6046281 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013510 | TOR2A
Description
Bos taurus torsin family 2, member A (TOR2A), mRNA. [Source:RefSeq mRNA;Acc:NM_001083476]
Coordinates
chr11:98426160-98428335:-
Coord C1 exon
chr11:98428070-98428335
Coord A exon
chr11:98426949-98427124
Coord C2 exon
chr11:98426160-98426287
Length
176 bp
Sequences
Splice sites
3' ss Seq
CTCTCGCCTCTCTCCCACAGAAG
3' ss Score
10.55
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
Exon sequences
Seq C1 exon
GTCTGGAGTGTGACCTGGCCCAGCACCTGGCGGGCCAGCACTTGGCCAGGTCGCTGGTGGTGAAGGCACTGAAGGCTTTCCTGCAGGATCCAGCCCCCACCAAGCCGCTGGTCCTCTCTCTGCATGGCTGGACCGGCACTGGCAAGTCCTATGTCAGCTCCCTGCTGGCGCACTACCTCTTCCGGGATGGCCTCCGTAGCCCCCACGTGCATCACTTTTCCCCGGTCATCCACTTCCCCCACCCCAGCCACTTGGAGCGCTACAAG
Seq A exon
AAGGATCTTAAGAGCTGGGTGCAGGGGAACCTCACTGTCTGCAGCCGCTCCCTCTTTCTCTTCGATGAGATGGACAAGCTGGCCCCAGGCCTGATAGAAGTCCTGCGACCTTTCCTGGGCTCCTCCTGGGTTGTCTACGGGACCAACTATCGTAAAGCCATCTTCATCTTCATCAG
Seq C2 exon
CAACACCGGTGGTGAGCAGATCAACCAGGTGGTGCTGGAGGCGTGGCGCAGCCGCCGGGAACGTGAAGAGATCGGCCTGCAGGAGCTGGGGCCGGTCATCTCTCAGGCTGTGCTGGACAACCCGCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013510-'2-4,'2-2,7-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF063096=Torsin=FE(69.8=100)
A:
PF063096=Torsin=PD(15.9=33.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTGGTGAAGGCACTGAAG
R:
CCTGGTTGATCTGCTCACCAC
Band lengths:
242-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]