GgaEX0006836 @ galGal4
Exon Skipping
Gene
ENSGALG00000026424 | TOR2A
Description
torsin family 2, member A [Source:HGNC Symbol;Acc:HGNC:11996]
Coordinates
chr17:4923996-4925922:+
Coord C1 exon
chr17:4923996-4924261
Coord A exon
chr17:4925267-4925442
Coord C2 exon
chr17:4925795-4925922
Length
176 bp
Sequences
Splice sites
3' ss Seq
CTGGTGGATACTTTTCCTAGGAG
3' ss Score
3.83
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTCTGGAGTGCGAGCTGGCCGTGACCCTGGTGGGGCAGCCCCTGGTGAGGCGGCAGCTGATGGAGGGACTGAGGCAGTTCCTGGAGAAGCGCAGCCCGGAGAAGCCCCTCGTCATGTCCTTCCACGGCTCCACCGGGACGGGGAAAACCTTTGTGAGCGCCATGCTGGTCCGGCACCTCTTCCCCGAGGGGCTGCAGAGCCCCCACGTCCACCAGTTCTCCCCCATCGTGCACTTCCCGCACGCGGAGCACGTGGAGCGCTATAAG
Seq A exon
GAGAACCTGAAGCACTGGATCCAAGGGAACCTGACCAACTGCGGACGGTCGGTCTTTCTCTTTGAGGAGATGGACAAGATGCACCCGGGCCTGATTGATGTGATCATGCCATTCCTGGGACCCTCCTGGGTCGTGTATGGGACCAACTACCGCAAAGCAATCTTCATCTTCATAAG
Seq C2 exon
CAATGCAGGAGGAGAGCAGATCAATGAAATGACACTGGATCTCTGGCGTGCCCACCAGGACCGGGAGGAGATCAGCCTGCAGGACATGGAGGCAGCCATCTCCAAAGCGGTGTTTGAGAACCCTCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026424_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF063096=Torsin=FE(75.9=100)
A:
PF063096=Torsin=PD(17.2=33.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACGGGGAAAACCTTTGTGA
R:
GAGGGTTCTCAAACACCGCTT
Band lengths:
256-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]