MmuEX0035468 @ mm9
Exon Skipping
Gene
ENSMUSG00000026991 | Pkp4
Description
plakophilin 4 [Source:MGI Symbol;Acc:MGI:109281]
Coordinates
chr2:59185981-59193262:+
Coord C1 exon
chr2:59185981-59186098
Coord A exon
chr2:59190319-59190392
Coord C2 exon
chr2:59192260-59193262
Length
74 bp
Sequences
Splice sites
3' ss Seq
AATAAAATATTTTCTTACAGGCT
3' ss Score
7.81
5' ss Seq
CAGGTGAAT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GATGGGTGGAATCAGAACCATTTTATTACACCTGTGTCCACGCTAGAGCGAGACCGATTCAAATCACACCCTTCTCTGTCCACCACCAACCAACAGATGTCGCCCATCATTCAGTCAG
Seq A exon
GCTCCAGCAAACCTTCACCAATATACATCAGTTCCTATTCCTCACCAGCAAGAGAACAAAATAGACGGCTACAG
Seq C2 exon
CATCAGCAGCTGTACTATCAAGATGACTCCACCAGGAAGACCTTGGATGCATACAGACTGTACCTGCAGTCTCCTCGAAGCTATGAAGACCCTTATTGTGATGACCGAGTTCACTTCCCAGCTTCTACTGATTACTCAACGCAGTACGGACTGAAATCAACCACGAATTATGTAGACTTTTATTCCACTAAACGACCTTCTTATAGAGCCGAACAGTACCCTGGGTCCCCGGACTCCTGGGTGTAGCATCAAGACGGCTGCCTGCTGAGGGGCGCTTTCCTTCTGACTCTGTTTGGATTGAGGGGAAGTCCGTCTTGCTGATGATGGTGACCGTGAAAGTGAAATGGAAGGGATGAGTGAAGAGGTTTTGGTTTGTTTGTTTGTTTTTTCTTTTTTTGAGGAATTTTCAGGGAAGTGAGGAAACCCTTGGGAGAGGACTTTGTACGCGCTGTGTAGGTGTTAGATCTAATTACTTGTAGAGTCTAGTGGTGAAGGTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026991_MULTIEX2-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.545 A=0.740 C2=0.299
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGTCCACCACCAACCAAC
R:
GAAGCTGGGAAGTGAACTCGG
Band lengths:
170-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: