GgaEX1044126 @ galGal3
Exon Skipping
Gene
ENSGALG00000012561 | PKP4
Description
NA
Coordinates
chr7:38067513-38069369:+
Coord C1 exon
chr7:38067513-38067644
Coord A exon
chr7:38068367-38068440
Coord C2 exon
chr7:38069000-38069369
Length
74 bp
Sequences
Splice sites
3' ss Seq
CAAAATCTATTTTCTCACAGGCT
3' ss Score
7.11
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
TTGGCAGTACATCTTCATCACCAGCTTTATTAGGAATTAGAGAACCCCGCTCTGAATATGACAGAACACAACCTTCTATGCAGTATTACAACAACCACGGCGATATCATTACTCACAAAGACATCTATACCG
Seq A exon
GCTCCAGCAAAACTTCACCAATTTACATCAGTTCTTATTCCTCACCAGCGAGAGAACAGAACAGACGGCTACAG
Seq C2 exon
CATCAGCAACTGTACTACAGTCAAGAAGACACCAACAGAAAAAACTGCGACGCGTACAGGTTGTACCTGCAGTCCCCACACAGCTATGAAGACCCATACTTTGACGATCGAGTTCACTTTCCTGCTTCTTCAGACTACACAACGCAGTATGGACTGAAATCAACCACAAATTATGTAGACTTTTATTCCACCAGACGATCTTCTTATAGAGCAGAACAGTACCCGGGTTCACCTGACTCCTGGGTGTAGCATCAAAGGAAAAAAAAAAAAAACAACAGTATATTTCTCATTGTGCTTGAGAAGAAATGGAATGGCCTCATTTGATGTCTTGGTTATGAAATCTGAAGGTGAAATAAAAGAGGAAACAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012561-'40-44,'40-42,42-44=AN
Average complexity
A_S
Mappability confidence:
83%=80=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.556 A=0.640 C2=0.195
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCCGCTCTGAATATGACAGA
R:
GGTCTTCATAGCTGTGTGGGG
Band lengths:
183-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]