GgaEX1044126 @ galGal4
Exon Skipping
Gene
ENSGALG00000012561 | PKP4
Description
plakophilin-4 [Source:RefSeq peptide;Acc:NP_001006529]
Coordinates
chr7:35932268-35934124:+
Coord C1 exon
chr7:35932268-35932399
Coord A exon
chr7:35933122-35933195
Coord C2 exon
chr7:35933755-35934124
Length
74 bp
Sequences
Splice sites
3' ss Seq
CAAAATCTATTTTCTCACAGGCT
3' ss Score
7.11
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
TTGGCAGTACATCTTCATCACCAGCTTTATTAGGAATTAGAGAACCCCGCTCTGAATATGACAGAACACAACCTTCTATGCAGTATTACAACAACCACGGCGATATCATTACTCACAAAGACATCTATACCG
Seq A exon
GCTCCAGCAAAACTTCACCAATTTACATCAGTTCTTATTCCTCACCAGCGAGAGAACAGAACAGACGGCTACAG
Seq C2 exon
CATCAGCAACTGTACTACAGTCAAGAAGACACCAACAGAAAAAACTGCGACGCGTACAGGTTGTACCTGCAGTCCCCACACAGCTATGAAGACCCATACTTTGACGATCGAGTTCACTTTCCTGCTTCTTCAGACTACACAACGCAGTATGGACTGAAATCAACCACAAATTATGTAGACTTTTATTCCACCAGACGATCTTCTTATAGAGCAGAACAGTACCCGGGTTCACCTGACTCCTGGGTGTAGCATCAAAGGAAAAAAAAAAAAAACAACAGTATATTTCTCATTGTGCTTGAGAAGAAATGGAATGGCCTCATTTGATGTCTTGGTTATGAAATCTGAAGGTGAAATAAAAGAGGAAACAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012561-'45-52,'45-50,47-52
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.456 A=0.640 C2=0.195
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSGALT00000020513fB10636
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCCGCTCTGAATATGACAGA
R:
GGTCTTCATAGCTGTGTGGGG
Band lengths:
183-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]