BtaEX0027323 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013773 | PKP4
Description
Bos taurus plakophilin 4 (PKP4), mRNA. [Source:RefSeq mRNA;Acc:NM_001191491]
Coordinates
chr2:37815459-37822106:-
Coord C1 exon
chr2:37821989-37822106
Coord A exon
chr2:37817715-37817788
Coord C2 exon
chr2:37815459-37815954
Length
74 bp
Sequences
Splice sites
3' ss Seq
CATAAAATATTTTCTTACAGGCT
3' ss Score
7.97
5' ss Seq
CAGGTGAAT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GATGGGTGGAATCAGAACCATTTTATTACACCTGTGTCAACGTTAGAGCGAGACCGGTTCAAATCGCATCCTTCCTTGTCTACCACCAACCAACAGATGTCACCCGTCATTCAGTCAG
Seq A exon
GCTCCAGCAAACCTTCACCAATTTACATCAGTTCCTATTCCTCACCAGCAAGAGAACAAAATAGACGGCTACAG
Seq C2 exon
CATCAACAGCTGTATTATAGTCAAGATGACTCCAACAGAAAGAACTTTGATGCATACAGATTGTATTTGCAGTCTCCTCATAGCTATGAAGATCCTTATTTTGATGACCGAGTTCACTTTCCAGCTTCTACTGATTATTCGACACAGTATGGACTGAAATCAACCACGAATTACGTGGACTTTTATTCCACTAAACGACCTTCTTACAGAGCAGAACAGTACCCAGGGTCCCCAGACTCATGGGTGTAGCATCCTGATGCTTGGGAGAGGAACTCTTTCTTTCTAACTCTGTTTGGATTGAGATGAGAAGTCCGTCTTGCTGATTTGCTGATGAAATGTGAAAGTGACATGGAAGGAATGAGTGAAGAGCATATTCTTTTTTTCTTTTTTGAGGAATTTTCAGGGAAGTGAGGCAACCTTCGGGAGAAAGGACTTTCTAAGCTATATTTAGGTGTTAGATCTAATTACTTGTAGATTCTATAGTCTGGTGAAGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013773_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.625 A=0.760 C2=0.268
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCATCCTTCCTTGTCTACCAC
R:
GCTGGAAAGTGAACTCGGTCA
Band lengths:
179-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development