BtaEX0027322 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013773 | PKP4
Description
Bos taurus plakophilin 4 (PKP4), mRNA. [Source:RefSeq mRNA;Acc:NM_001191491]
Coordinates
chr2:37817715-37822106:-
Coord C1 exon
chr2:37821989-37822106
Coord A exon
chr2:37819421-37819549
Coord C2 exon
chr2:37817715-37817788
Length
129 bp
Sequences
Splice sites
3' ss Seq
CCTCTCACCTGTCCCTTCAGTCG
3' ss Score
8.16
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GATGGGTGGAATCAGAACCATTTTATTACACCTGTGTCAACGTTAGAGCGAGACCGGTTCAAATCGCATCCTTCCTTGTCTACCACCAACCAACAGATGTCACCCGTCATTCAGTCAG
Seq A exon
TCGGCAGCACCTCGTCCTCACCAGCACTGTTAGGAGTCAGAGACCCTCGCTCTGAATACGATAGGACCCAGCCACCTATGCAGTATTACAGTAGCCAAGGGGATGCCACACACAGAGGCCTGTACCCTG
Seq C2 exon
GCTCCAGCAAACCTTCACCAATTTACATCAGTTCCTATTCCTCACCAGCAAGAGAACAAAATAGACGGCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013773_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.625 A=0.932 C2=0.760
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGGTGGAATCAGAACCAT
R:
AGCCGTCTATTTTGTTCTCTTGCT
Band lengths:
188-317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development