GgaEX1044124 @ galGal3
Exon Skipping
Gene
ENSGALG00000012561 | PKP4
Description
NA
Coordinates
chr7:38064985-38068440:+
Coord C1 exon
chr7:38064985-38065102
Coord A exon
chr7:38067513-38067644
Coord C2 exon
chr7:38068367-38068440
Length
132 bp
Sequences
Splice sites
3' ss Seq
AGCCTTTCTTTTTTCATCAGTTG
3' ss Score
6.45
5' ss Seq
CCGGTAAGG
5' ss Score
10.19
Exon sequences
Seq C1 exon
GATGGATGGAATCAGAGTCACTTCATTACACCGGTATCGACACTTGAACGGGAGAGATTCAAATCCCACCCCTCGTTATCAACAGCAAATCAGCAGATGTCACCGGTCATACAGTCAG
Seq A exon
TTGGCAGTACATCTTCATCACCAGCTTTATTAGGAATTAGAGAACCCCGCTCTGAATATGACAGAACACAACCTTCTATGCAGTATTACAACAACCACGGCGATATCATTACTCACAAAGACATCTATACCG
Seq C2 exon
GCTCCAGCAAAACTTCACCAATTTACATCAGTTCTTATTCCTCACCAGCGAGAGAACAGAACAGACGGCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012561-'39-42,'39-40,40-42=AN
Average complexity
A_S
Mappability confidence:
88%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.537 A=0.556 C2=0.640
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGATGGAATCAGAGTCACTTCA
R:
GCCGTCTGTTCTGTTCTCTCG
Band lengths:
186-318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]