DreEX6020986 @ danRer10
Exon Skipping
Gene
ENSDARG00000045331 | pkp4
Description
plakophilin 4 [Source:ZFIN;Acc:ZDB-GENE-120411-14]
Coordinates
chr6:11969309-11975729:-
Coord C1 exon
chr6:11975612-11975729
Coord A exon
chr6:11975355-11975486
Coord C2 exon
chr6:11969309-11969382
Length
132 bp
Sequences
Splice sites
3' ss Seq
CAATATTCTTCCACATTTAGGAG
3' ss Score
6.98
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GATGGTTGGAACCAGAATCACTTCATCACCCCAGTATCAACGCTGGAACGGGACCGATACCGTTCCCAACCGACTCTGCCAACCAGCAACGTACAAATGTCCCCTGTCATCCAATCAG
Seq A exon
GAGGCAGTGCCACCTCTTCTCCTGCCATGTTGGGTATAAGAGGTCAGCGTTTAAATCAGCGAAGGACCCAGTCGTCTATGCAACTTCATAACTATTATGGAGACGCCAACAGAAACACAAGTCAATATACAG
Seq C2 exon
GGTCTGGGAAGCAGTCAGCCTATTTCATCAGTTCCTTTCCCTCGCCTTCAGCGGAGGAGTCCCGCAGATCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045331-'26-24,'26-22,27-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.675 A=0.844 C2=0.680
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAACCAGAATCACTTCATCACC
R:
CTGTGATCTGCGGGACTCCTC
Band lengths:
186-318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]