HsaEX0047797 @ hg19
Exon Skipping
Gene
ENSG00000144283 | PK4P
Description
plakophilin 4 [Source:HGNC Symbol;Acc:9026]
Coordinates
chr2:159530395-159534792:+
Coord C1 exon
chr2:159530395-159530512
Coord A exon
chr2:159533251-159533379
Coord C2 exon
chr2:159534711-159534792
Length
129 bp
Sequences
Splice sites
3' ss Seq
TCCTTTGCCTCTCCCTTCAGTCG
3' ss Score
10.26
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GATGGGTGGAATCAGAACCATTTTATTACACCTGTGTCGACATTGGAGCGAGACCGATTCAAATCACATCCTTCCTTGTCTACCACCAACCAACAGATGTCACCCATCATTCAGTCAG
Seq A exon
TCGGCAGCACCTCTTCCTCACCAGCACTGTTAGGAATCAGAGACCCTCGCTCTGAATACGATAGGACCCAGCCACCTATGCAGTATTACAATAGCCAAGGGGATGCCACACATAAAGGCCTGTACCCTG
Seq C2 exon
CTCAGAGCCCTGGAAAAGGAGTGTTCCTCAGCTCAGGATCCCGTGCTGCTGTCCAAAGCCAGCTGGAGAAACCCTCCCACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144283-'51-52,'51-51,52-52
Average complexity
C3
Mappability confidence:
88%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.600 A=0.841 C2=0.679
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGGTGGAATCAGAACCAT
R:
GAGGGTTTCTCCAGCTGGCTT
Band lengths:
194-323
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)