RnoEX0066498 @ rn6
Exon Skipping
Gene
ENSRNOG00000005504 | Pkp4
Description
plakophilin 4 [Source:RGD Symbol;Acc:1307840]
Coordinates
chr3:45407847-45411950:+
Coord C1 exon
chr3:45407847-45407964
Coord A exon
chr3:45410187-45410315
Coord C2 exon
chr3:45411877-45411950
Length
129 bp
Sequences
Splice sites
3' ss Seq
TCCTTTGCCTCTCCCTTCAGTTG
3' ss Score
11.41
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GATGGGTGGAATCAGAACCATTTTATTACACCTGTGTCCACGCTAGAGCGAGACCGATTCAAATCACACCCTTCTCTGTCCACCACCAACCAACAGATGTCACCCGTCATTCAGTCAG
Seq A exon
TTGGCAGCACCTCCTCCTCACCAGCACTGTTAGGAATCAGAGAGCCTCGCTCTGAATACGATAGGACCCAGCCACCTATGCAGTATTACAATAGCCAAGGGGACACCACACATAAAGGCCTGTACCCTG
Seq C2 exon
GCTCCAGCAAACCTTCACCAATATACATCAGTTCCTATTCCTCACCAGCAAGAGAACAAAACAGACGGCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005504_MULTIEX2-8/9=7-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.625 A=0.909 C2=0.760
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGGTGGAATCAGAACCAT
R:
GCCGTCTGTTTTGTTCTCTTGC
Band lengths:
187-316
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]