GgaEX1044124 @ galGal4
Exon Skipping
Gene
ENSGALG00000012561 | PKP4
Description
plakophilin-4 [Source:RefSeq peptide;Acc:NP_001006529]
Coordinates
chr7:35929740-35933195:+
Coord C1 exon
chr7:35929740-35929857
Coord A exon
chr7:35932268-35932399
Coord C2 exon
chr7:35933122-35933195
Length
132 bp
Sequences
Splice sites
3' ss Seq
AGCCTTTCTTTTTTCATCAGTTG
3' ss Score
6.45
5' ss Seq
CCGGTAAGG
5' ss Score
10.19
Exon sequences
Seq C1 exon
GATGGATGGAATCAGAGTCACTTCATTACACCGGTATCGACACTTGAACGGGAGAGATTCAAATCCCACCCCTCGTTATCAACAGCAAATCAGCAGATGTCACCGGTCATACAGTCAG
Seq A exon
TTGGCAGTACATCTTCATCACCAGCTTTATTAGGAATTAGAGAACCCCGCTCTGAATATGACAGAACACAACCTTCTATGCAGTATTACAACAACCACGGCGATATCATTACTCACAAAGACATCTATACCG
Seq C2 exon
GCTCCAGCAAAACTTCACCAATTTACATCAGTTCTTATTCCTCACCAGCGAGAGAACAGAACAGACGGCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012561-'44-50,'44-48,45-50
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.525 A=0.456 C2=0.640
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGATGGAATCAGAGTCACTTCA
R:
GCCGTCTGTTCTGTTCTCTCG
Band lengths:
186-318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]