DreEX0055925 @ danRer10
Exon Skipping
Gene
ENSDARG00000045331 | pkp4
Description
plakophilin 4 [Source:ZFIN;Acc:ZDB-GENE-120411-14]
Coordinates
chr6:11964636-11975486:-
Coord C1 exon
chr6:11975355-11975486
Coord A exon
chr6:11969309-11969382
Coord C2 exon
chr6:11964636-11966583
Length
74 bp
Sequences
Splice sites
3' ss Seq
ATTTGTCATTGTGTGTTTAGGGT
3' ss Score
8.97
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GAGGCAGTGCCACCTCTTCTCCTGCCATGTTGGGTATAAGAGGTCAGCGTTTAAATCAGCGAAGGACCCAGTCGTCTATGCAACTTCATAACTATTATGGAGACGCCAACAGAAACACAAGTCAATATACAG
Seq A exon
GGTCTGGGAAGCAGTCAGCCTATTTCATCAGTTCCTTTCCCTCGCCTTCAGCGGAGGAGTCCCGCAGATCACAG
Seq C2 exon
CACGGCCGGCTTTACTACCCAGAGGAGGTCAATCAAGGCACCTACGACACTTTCGGGATGTACCTGTCGTCTCCATTAGGCTACGAGGACGCTTACCTGGACGAGCCGGTCCGATATCCTGTGGTGAGCGAACGGCAGGTGCTCAAACCCAACACCAACTACGTGGACTTCTACTCCACCACACGCAGGCCTTCATACAGGACTCAGCCCTACCCCGCCTCGCCCGACTCATGGGTGTAGGCATGTACACGTGTGTATTTGTTCATGTGACGTGTAGCCATAGATAGAATATTACAAGGAGGAGTTTCTCCGTTAGACATATCTGGATCAGTGGATTCCAAGAGCTGTTGCATTTGAAGTGACTGGTTCATTTTCATTCAACAAATTTAATTAGTGTTATGAGTGTGTGTGCGCGCGCATAAGACGGTGCAGCGACATTCATTAATGTGTGTGTGGGAGAGTGTGTGCGCGTGTGAATGACAGATTATATGGTCCATTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045331-'27-25,'27-24,28-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.844 A=0.680 C2=0.316
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACCCAGTCGTCTATGCAA
R:
TCCAGGTAAGCGTCCTCGTAG
Band lengths:
171-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]