RnoEX0066499 @ rn6
Exon Skipping
Gene
ENSRNOG00000005504 | Pkp4
Description
plakophilin 4 [Source:RGD Symbol;Acc:1307840]
Coordinates
chr3:45395102-45414613:+
Coord C1 exon
chr3:45395102-45395285
Coord A exon
chr3:45411877-45411950
Coord C2 exon
chr3:45413529-45414613
Length
74 bp
Sequences
Splice sites
3' ss Seq
AATAAAATATTTCCTTACAGGCT
3' ss Score
7.86
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GGGTTCTTTGGAATTTATCCTCATGTGACGCTGTAAAGATGACAATCATTCGAGATGCTCTCTCAACCTTAACCAACACTGTGATAGTTCCACATTCTGGGTGGAATGACTCTTCCTTTGATGATGATCATAAAATTAAATTTCAGACCTCGCTGGTTCTGCGGAACACGACAGGTTGCCTGAG
Seq A exon
GCTCCAGCAAACCTTCACCAATATACATCAGTTCCTATTCCTCACCAGCAAGAGAACAAAACAGACGGCTACAG
Seq C2 exon
CACCAACAGCTGTACTATCAAGATGACTCCACCAGGAAGACCTTGGATGCTTACAGACTGTACCTGCAGTCTCCTCGCAGCTATGAAGACCCTTACGGTGATGACCGAGTTCACTTCCCAGCTTCTACTGATTACTCAACGCAGTATGGACTGAAATCAACCACAAATTACGTAGACTTTTACTCCACTAAACGACCTTCTTATAGAGCCGAACAGTACCCTGGGTCCCCGGACTCCTGGGTGTAGCATCAAGACGGCTGCCTGCCGAGGGCCGATTTTCTTCTGACTCTGCTTGGACTGAGGGGAGTCCGTCTTGCTGATGATGGTGACCGTGAAAGTGAAGTGGAAGGGATGAGTGAAGAGGTTTTGTTTGTTTTTTTTTTTTCTTTTTTGAGGAATTTTCAGGGAAGTGAAGAAACCCTTGGGAGAGGACTTTCTACGCTCTGTGTAGGTGTTAGATCTAATTACTTGTAGATTCTAGTGGTGAAGGTGTGGGTGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005504_MULTIEX2-9/9=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.760 C2=0.543
Domain overlap (PFAM):
C1:
PF0051418=Arm=PD(16.7=11.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGGTGGAATGACTCTTCCT
R:
GGGTCTTCATAGCTGCGAGGA
Band lengths:
181-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]