MmuEX0020818 @ mm9
Exon Skipping
Gene
ENSMUSG00000086644 | Gm13470
Description
predicted gene 13470 [Source:MGI Symbol;Acc:MGI:3649387]
Coordinates
chr2:46275055-46298230:-
Coord C1 exon
chr2:46298170-46298230
Coord A exon
chr2:46278151-46278235
Coord C2 exon
chr2:46275055-46275329
Length
85 bp
Sequences
Splice sites
3' ss Seq
TGTCTTGTCTTTAATTAAAGGAG
3' ss Score
5.9
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
AAAGGTTCCAAGAGTAACTACGAGCCACAGAGCCAGGACAGAAAGCCTCCCGACTCCCTGT
Seq A exon
GAGCCTTTACCAGGAACCCCTTGTTCTTCATCAATAAAAGCCAGCATTACTTCTAGGAAACACTTCTAGTGTATACAGATCAGTG
Seq C2 exon
GTTGGCATCAGAAATGGCCTACAGCCTCTGAATCAAGTGATGATTTCACCCCAGACAACAAGAACCCACGTGACTGTTGCCATAGCAACGACCACACATTACTAGTGCTCACTTCATTCACTTCACCTGCCCACCACCTTACCTGTGTGTGGTAGTGCGTCTAATTACATCACAGCCCAAATAAAAGACAGGGATCCCAGAACCCTCACCCTTCTTCATTGCCCTCCTGTTTTCCTCTTCCCTTCCCCTCTTCCCCTTAATAAACCTTTTCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000086644_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAACTACGAGCCACAGAGCCA
R:
GTGGGCAGGTGAAGTGAATGA
Band lengths:
181-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: