MmuEX0020818 @ mm10
Exon Skipping
Gene
ENSMUSG00000086644 | Gm13470
Description
predicted gene 13470 [Source:MGI Symbol;Acc:MGI:3649387]
Coordinates
chr2:46419535-46442710:-
Coord C1 exon
chr2:46442650-46442710
Coord A exon
chr2:46422631-46422715
Coord C2 exon
chr2:46419535-46419809
Length
85 bp
Sequences
Splice sites
3' ss Seq
TGTCTTGTCTTTAATTAAAGGAG
3' ss Score
5.9
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
AAAGGTTCCAAGAGTAACTACGAGCCACAGAGCCAGGACAGAAAGCCTCCCGACTCCCTGT
Seq A exon
GAGCCTTTACCAGGAACCCCTTGTTCTTCATCAATAAAAGCCAGCATTACTTCTAGGAAACACTTCTAGTGTATACAGATCAGTG
Seq C2 exon
GTTGGCATCAGAAATGGCCTACAGCCTCTGAATCAAGTGATGATTTCACCCCAGACAACAAGAACCCACGTGACTGTTGCCATAGCAACGACCACACATTACTAGTGCTCACTTCATTCACTTCACCTGCCCACCACCTTACCTGTGTGTGGTAGTGCGTCTAATTACATCACAGCCCAAATAAAAGACAGGGATCCCAGAACCCTCACCCTTCTTCATTGCCCTCCTGTTTTCCTCTTCCCTTCCCCTCTTCCCCTTAATAAACCTTTTCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000086644_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAACTACGAGCCACAGAGCCA
R:
GTGGGCAGGTGAAGTGAATGA
Band lengths:
181-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types