MmuEX0051937 @ mm9
Exon Skipping
Gene
ENSMUSG00000026917 | Wdr5
Description
WD repeat domain 5 [Source:MGI Symbol;Acc:MGI:2155884]
Coordinates
chr2:27383794-27387234:+
Coord C1 exon
chr2:27383794-27383840
Coord A exon
chr2:27386472-27386519
Coord C2 exon
chr2:27387159-27387234
Length
48 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCGTGTCCCTTTCAGTGT
3' ss Score
11.14
5' ss Seq
GTGGTAATG
5' ss Score
4.46
Exon sequences
Seq C1 exon
CCGAATCTGGGACACCGCCTCTGGCCAGTGTCTGAAGACACTCATTG
Seq A exon
TGTTTGTGACCAGTCACGAGAAACGGAGCCCCCTGCGAACCCCCTGTG
Seq C2 exon
ATGATGACAATCCTCCAGTGTCCTTCGTGAAGTTCTCTCCAAATGGCAAATACATCCTGGCTGCAACTTTGGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026917_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.000 A=0.125 C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(10.3=23.5),PF0040027=WD40=PU(20.0=47.1)
A:
PF0040027=WD40=PU(2.9=6.2)
C2:
PF0040027=WD40=FE(62.5=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATCTGGGACACCGCCTCT
R:
TCCAAAGTTGCAGCCAGGATG
Band lengths:
118-166
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types