MmuEX0019394 @ mm9
Exon Skipping
Gene
ENSMUSG00000036053 | Fmnl2
Description
formin-like 2 [Source:MGI Symbol;Acc:MGI:1918659]
Coordinates
chr2:52967286-52973270:+
Coord C1 exon
chr2:52967286-52967492
Coord A exon
chr2:52969557-52969621
Coord C2 exon
chr2:52973146-52973270
Length
65 bp
Sequences
Splice sites
3' ss Seq
TGTTTACCACTTTCTTCTAGAAC
3' ss Score
8.26
5' ss Seq
AATGTAAAT
5' ss Score
2.37
Exon sequences
Seq C1 exon
CACAAAATGGAACAGCATCGCCACCTATGTCCCCACCTCCTCCCCCACCCCCTCCACCCCCTCCCCCACCCCCTCCACCCCCTCCACTCCCAGGCCCTGCAGCTGAGACTTCACCAGCTCCTCCTCTGCCACCACCCCCACCTCCCTCTGCACCCCCGCTGCCTGGGACTTCTTCACCTACAGTGGTTTTCAACTCAGGATTAGCAG
Seq A exon
AACTTTTGTTGCTTCGGAAGAGGAAGGGTGGAGGAGAGTCACCGTGGAGCTATTGGAGTCTGAAT
Seq C2 exon
CTGTGAAAATTAAGAAGCCAATCAAGACGAAGTTCCGAATGCCAGTGTTTAACTGGGTCGCCCTGAAGCCCAATCAGATCAACGGCACAGTCTTCAATGAAATCGATGATGAGCGGATCCTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036053-'21-19,'21-17,22-19
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.935 A=0.955 C2=0.075
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0218118=FH2=PU(10.4=90.5)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTCACCAGCTCCTCCTCT
R:
GATCTGATTGGGCTTCAGGGC
Band lengths:
181-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: