RnoEX0036395 @ rn6
Exon Skipping
Gene
ENSRNOG00000055567 | Fmnl2
Description
formin-like 2 [Source:RGD Symbol;Acc:1560248]
Coordinates
chr3:38651758-38655753:+
Coord C1 exon
chr3:38651758-38651943
Coord A exon
chr3:38654123-38654187
Coord C2 exon
chr3:38655729-38655753
Length
65 bp
Sequences
Splice sites
3' ss Seq
TGTTGACCACTTTCTTCTAGAAC
3' ss Score
7.28
5' ss Seq
AATGTAAAT
5' ss Score
2.37
Exon sequences
Seq C1 exon
CTCAAAATGGACCAGCATCACCACCTATGTCCCCACCTCCACGCCTCCCCACCTCGCCCCCTCCACTCCCAGGTCCTGCAGCTGAGACTGTGCCAGCTCCTCCTCTGCCACCACCCCCACCTCCCTCTGCACCCCCGTTGCCTGGGACTTCTTCACCTACAGTAGTTTTCAACTCAGGATTAGCAG
Seq A exon
AACTTTTATTGCTTCCGAAGAGGAAAGGTGGAGGAGAGTCATCACGGAGCAATTGGATTCTGAAT
Seq C2 exon
ATGGGCCAATCAAGCTTTTCTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055567-'16-20,'16-19,17-20
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.923 A=1.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000085545fB5620
Main Skipping Isoform:
ENSRNOT00000085545fB5623
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGTCCCCACCTCCACGC
R:
CAGAAAAGCTTGATTGGCCCA
Band lengths:
183-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]