MmuEX0039809 @ mm9
Exon Skipping
Gene
ENSMUSG00000036202 | Rif1
Description
Rap1 interacting factor 1 homolog (yeast) [Source:MGI Symbol;Acc:MGI:1098622]
Coordinates
chr2:51954373-51960108:+
Coord C1 exon
chr2:51954373-51954472
Coord A exon
chr2:51958953-51959217
Coord C2 exon
chr2:51960066-51960108
Length
265 bp
Sequences
Splice sites
3' ss Seq
TCAACCCAATTATGTCTTAGCAC
3' ss Score
4.07
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GATTTGCTATTCTTGGACAGGATCTCTCATATTATTATTGTAATGGTTGATTGTATCGACTTTTCACCATATAATAAGAAATACCAGCCAAAAATCAAAT
Seq A exon
CACCGCAGAGATCTTCAGATTGGTCCAGAAAGAAGAAGGAGCCTCTAGGGAAATTGGCTTCTTTATTTAAGCTAATTGTGAAAGTCATCGATACTTTCCACACTCTAAGCCTCAAGGAAACATTCTCTGATACACTGCTTGCTATTGGTAACTCTATCATTAGCATGCTTTCCAATGTATTTGGACATATTTCCTTGCCCTCTATGATCCGAGAAATATTTGCAACTTTTACAAGACCTCTGGCTTTACTGTATGAAAACTCAAA
Seq C2 exon
GCTGGATGAGGCTCCTAAAGTGTATACTAGTCTGAACAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036202-'30-33,'30-31,32-33
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.011 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTATTCTTGGACAGGATCTCT
R:
TCAGACTAGTATACACTTTAGGAGCC
Band lengths:
132-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: