RnoEX6016756 @ rn6
Exon Skipping
Gene
ENSRNOG00000054901 | Rif1
Description
replication timing regulatory factor 1 [Source:RGD Symbol;Acc:1562474]
Coordinates
chr3:37625468-37629965:+
Coord C1 exon
chr3:37625468-37625567
Coord A exon
chr3:37628839-37629103
Coord C2 exon
chr3:37629923-37629965
Length
265 bp
Sequences
Splice sites
3' ss Seq
TCAAGCCAATTATGTCTTAGCAC
3' ss Score
2.7
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GACTTGCTGTTCTTGGACAGGATTTCTCATGTTGTTGTAGTAATGGTTGATTGTATTGACTTTTCACCATATAATATTAAATACCAGCCGAAAATCAAAT
Seq A exon
CACCACAGAGATCTTCAGATTGGTCCAGGAAGAAGAAGGAGCCCCTAGGGAAATTGGCTTCTTTATTTAAGCTAATCGTGAGAATCATCGATTCTTTCCACACTCTAAGCCTCAAGGAAACATACTCTGATACACTGCTTGCTATTGGTAACTCTATCATTAGCATGCTTTCCAATATATTTGGACATATTTCTTTGTCGTCTATGATCCGAGAAATATTTACAACTTTTACAAGACCCCTGGCTTTACTCTATGAAAATTCAAA
Seq C2 exon
GCTTGATGAGGTTCCTAAAGTGTATACTAGTTTGAACAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054901-'27-25,'27-23,28-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTGCTGTTCTTGGACAGGA
R:
AACTAGTATACACTTTAGGAACCTCA
Band lengths:
132-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]