HsaEX6015897 @ hg38
Exon Skipping
Gene
ENSG00000080345 | RIF1
Description
replication timing regulatory factor 1 [Source:HGNC Symbol;Acc:HGNC:23207]
Coordinates
chr2:151451606-151456620:+
Coord C1 exon
chr2:151451606-151451705
Coord A exon
chr2:151454895-151455159
Coord C2 exon
chr2:151456578-151456620
Length
265 bp
Sequences
Splice sites
3' ss Seq
AATTCAGTTTTTGTTTTTAGCAC
3' ss Score
5.7
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
AATTTGTTGTTCGTGGATAGAATTATTTATATTATTACTGTAATGGTTGATTGCATTGACTTCTCACCATATAATATTAAATATCAGCCCAAAGTTAAAT
Seq A exon
CACCACAGAGACCTTCAGATTGGTCCAAAAAGAAGAATGAGCCCCTAGGGAAATTGACTTCTTTATTTAAACTTATTGTGAAAGTGATCTATTCTTTCCACACACTGAGCTTCAAGGAAGCACATTCTGATACCCTCTTCACTATTGGCAACTCAATCACCGGCATTATTTCCAGTGTACTTGGGCATATTTCTTTGCCTTCTATGATCCGAAAAATATTTGCAACTTTAACAAGACCTCTGGCATTATTTTATGAAAACTCAAA
Seq C2 exon
GCTTGATGAAGTTCCTAAAGTATATAGTTGTCTGAACAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000080345-'32-37,'32-35,34-37
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.059 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains